SGN Marker SSR448

SGN-M1121

SynonymsNone
Locus associationsNone
SSR info 

Annealing temperatures: Low: 60 High: 53
Repeat motif: CT   Repeat number: 14
Repeat motif:    Repeat number:
Forward primer: GAATGACCATCAGTACGGC
Reverse primer: CTGTGCTCCTCTATGCCCTC
Predicted size: 163
Derivations 
This marker was derived from EST read SGN-E11841
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 39246)
Chromosome
2
Position
0.00 cM
Confidence
I
Protocol
SSR


Tomato-EXPEN 2000
Other PCR data 
PCR data   Exp. ID 32033
Forward primer (5'-3')
GAATGACCATCAGTACGGC
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
CTGTGCTCCTCTATGCCCTC
Enzymes
  
Accessions and product sizes
Approximate temperature
53°C
  
Overgo hybridization and physical mapping 
SSR448 was used as an overgo probe on plate 10 [well D6]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
GGAGAAGAAAACGAGGGCATAGAG
B sequence
GTTTCTCTCTGTGCTCCTCTATGC
AB sequence
GGAGAAGAAAACGAGGGCATAGAGGAGCAC
Marker sequence
GAATGACCATCAGTACGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTG
TATCTCTCTCACTCACTCGCGGTGACTCACTCGCACGCGCGCGCTAAAAA
GCGAGGACAGGAGCGCGGGCTAAAAAAAAGGGGAGAAGAAAACGAGGGCA
TAGAGGAGCACAGAGAGAAACACCAACACACTCACAAAAAGACACAGAAA
AAGAGCCGGAAAAAGAAAGAGAAAAGCCGGAGGAGACTAAAAAAGGAACT
CCCAGGCAGGGAAAAAAGCTTGCGCACAAGAAGCGCACCCAATCGCAAGC
GATGGTATACAGACCAACACCCAAACAAGGAAACCGACCAACTAACGAAA
CCCCGAAAAGAAGCCAAGACCCATTGGAACGGCGAAAGAACAACGCGGGC
CGGGCAGACTTACAAACACGAAAATGGGCATGAAACCGGGGAAAGGAACC
TGTAAGAACCACATGAGGACCAATGAAAAAGACCCAAAACGGCGCCCACA
AGGTCATGAGCGATACCTCCACCATGATGCAAAGAAGGGAAGGCCCCCTG
AAAAAAGAAAACTGAACAAAACACAAACAGGCATTACCCACAAGGGGGGA
AAAAAAGGGACCCCCCCTTCGGGGCAAGGGAATACGAACCGACAAAAACC
AAGATCCCACAGGGGAAAGAAAAATGCAAAACCCAAACAAAGACGGTAAA
AAAACCGATTAAGTCTGAAGAAAAGTGGGCTAAAGAAGCCCCCCCCACCG
AAAGGAACCACCCCACGAAAATGCCCTAAAAGCACAATAAAAAACGACTG
GATCAGAACATGCAAAGGAAAAGACAAAACACGGAATGTAGTAGGGTGGT
ATGAAAAACAAAATGACTTTCCTNCTTCGNCTGTGGACACCAACAAATAA
CAAAAGAAG
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of SSR448  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D1121 marker 1121
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