SGN Marker CT88
SGN-M131
Synonyms |
Locus associations |
RFLP details |
Insert size
750
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image
CT88 image not available
|
Forward sequence
TTTTTTTTTTTTTTTTGTAGTTTAGAAGTGGCATAAAGTTGGGCCGAAGAGCTAGGAAGAGTAAGCATGTCAAGTGATAGTTGCAGCCAC
TGGTGTTATAGTTGTAGACAACCCGTGAATCTCAGGAGACAAAATGATGTTTGCCCCAATTGCGGTGGTGGATTTGTTCAAGAGCTTGAA GACATAACGAGTAGTAGTGTAGATAATCAGACCCAGAGGCCGAGATTCATGGAATCCGTCTCAAACTTTTTAAGACGACAAATCTCAGCT ACAAGTAATACTTCTGAGAGAGGGAGATCTGATGGGGGTGCTGAACGAGGAAATTTGTGGAATCCGTTGCTGATTTTCAGTGGTGATACG CCTGTTCATATGCCTGGGGATGGTGGAGTTT |
Reverse sequence
TTCTGTTGTAGCCATGGCGTGATACAATCCGAGTGATATAAGTGCTTGCAAGGCAATTTTGTTGCCTTAGTCCCCAGAGCAAATTTCTCC
TTACAAACAGGGCAGTGCGAATCCGATCTAACATCCTTTTTTGATATCTTGACTGTTGGTAGGGAATCAATTGAACATCTCGAGACAGGA GGAGGAGCACCACGCTGATTTCTATTTACAATTTCTTCAAAAAATTCCTCCACTCCTGGACCAACAAAATAATCACCACCATTTTCTTGT CGGAATCCAAGTGCCTCATTAAGAAACTCCAAAACTCCACCATCCCCAGGCATATGAACAGGCGTATCACCACTGAAAATCAGCAACGGA TTCCACAAATTTCCTCGTTCAGCACCCCCATCAGATCTCCCTCTCTCAGAAGTATTACTTGTAGCTGAGATTTGTCGTCTTAA |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U167378 | 1e-167 | 332 (84.9% of RFLP seq) | + |
SGN-U167378 | 1.3e-47 | 99 (22.3% of RFLP seq) | - |
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| ![]() Potato meta-QTL consensus map |
| ![]() Eggplant-COSII |
| ![]() Tomato-EXPEN 2000 |
| ![]() Tomato-EXHIR 1997 |
| ![]() Eggplant-LXM 2002 |
| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
CT88 was used as an overgo probe on plate 1 [well B7]
Plausible BAC Matches: None
Overgo Sequences
A sequence
TAATCAGACCCAGAGGCCGAGATT
|
B sequence
TGAGACGGATTCCATGAATCTCGG
|
AB sequence
TAATCAGACCCAGAGGCCGAGATTCATGGA
|
Marker sequence
TTTTTTTTTTTTTTTTGTAGTTTAGAAGTGGCATAAAGTTGGGCCGAAGA
GCTAGGAAGAGTAAGCATGTCAAGTGATAGTTGCAGCCACTGGTGTTATA GTTGTAGACAACCCGTGAATCTCAGGAGACAAAATGATGTTTGCCCCAAT TGCGGTGGTGGATTTGTTCAAGAGCTTGAAGACATAACGAGTAGTAGTGT AGATAATCAGACCCAGAGGCCGAGATTCATGGAATCCGTCTCAAACTTTT TAAGACGACAAATCTCAGCTACAAGTAATACTTCTGAGAGAGGGAGATCT GATGGGGGTGCTGAACGAGGAAATTTGTGGAATCCGTTGCTGATTTTCAG TGGTGATACGCCTGTTCATATGCCTGGGGATGGTGGAGTTT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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