SGN Marker T0256
SGN-M1390
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 2.01
Tomato EST read: TOVAZ40TH
Arabidopsis best BAC match: AB011482.1
Arabidopsis position: 5.2420000
Arabidopsis identities: 0.838
Best GenBank protein hit: BAB08802.1
Evalue: 7.0e-99
Identities: 0.854
Description: xylose isomerase [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TOVAZ40TH
Arabidopsis best BAC match: AB011482.1
Arabidopsis position: 5.2420000
Arabidopsis identities: 0.838
Best GenBank protein hit: BAB08802.1
Evalue: 7.0e-99
Identities: 0.854
Description: xylose isomerase [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0256 was used as an overgo probe on plate 7 [well C11]
Plausible BAC Matches: None
Overgo Sequences
A sequence
AATTCCCTGGCTATGGCCAAGAGA
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B sequence
AGTTGGCTCTCAGTCTTCTCTTGG
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AB sequence
AATTCCCTGGCTATGGCCAAGAGAAGACTG
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Marker sequence
CAAAGTCGTGGCCGTGGGAAGATGGCACCAATTCCCTGGCTATGGCCAAG
AGAAGACTGAGAGCCAACTTTGAATTCCTGGAGAAACTTGGAGTAGAAAG ATGGTGCTTCCACGATAGGGACATCGCTCCAGAGGGAAAGACCCTTGAGG AAACAAATGCAAACTTGGATGAAGTGGTGGCTCTTGCCAAAGAGCTTCAG GGAGATAAATTTCATCTTCTGTGGGGTACCGCTCAATTGTTCCTCCAGCC TCGCTACATGCATGGTGCTGCTACTAGCTCTGAATTAGGTGTATATGCAT ATGCTGCTGCTCAGGTCAAGAAAGCCATGGAGGTTACACATCATCTTGGG GGAGAGAATTATGTCTTTTGGGGTGGTCGAGAAGGTTACCAGAGCCTCCT GAACACAGATATGGAAAGAGAACTTAACCATATGGCAAGGTTCATGGAAG CTGCTGTCGCTTACAAAAAGAAGATTGGCTTCAATGGAACATTACTAATT GAACCAAAGCCTCAGGAGCCAACAAAACACCAGTATGACTGGGATGCTGC CACTTCTGCTAATTTCTTACGCAAATATGGGCTTATAGGAGAGTTCAAAT TGAACATCGAGTGCAACCATGCCACGTTGGCTGGTCACA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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