SGN Marker T0571
SGN-M1480
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 2.30.03
Tomato EST read: TMEAD21TH
Arabidopsis best BAC match: AC008113.4
Arabidopsis position: 1.1330000
Arabidopsis identities: 0.814
Best GenBank protein hit: AAC95000.1
Evalue: 1.5e-36
Identities: 0.567
Description: PsbY precursor; putative photosytem II peptide [Spinacia oleracea]
Comment: photosynthesis
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEAD21TH
Arabidopsis best BAC match: AC008113.4
Arabidopsis position: 1.1330000
Arabidopsis identities: 0.814
Best GenBank protein hit: AAC95000.1
Evalue: 1.5e-36
Identities: 0.567
Description: PsbY precursor; putative photosytem II peptide [Spinacia oleracea]
Comment: photosynthesis
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0571 was used as an overgo probe on plate 15 [well D12]
Plausible BAC Matches: P257L15, P327A15, P276E23, P278L18, P224L05, P077K02, P277P13, P105B17, P270J03, P153L05, P314J23, P255A10, P114I01, P019K08, P179I18, P266L07, P156C03
Overgo Sequences
A sequence
CTCTACCCTAAGCTCATGTGACTC
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B sequence
TTGAGCTGCAAATGCGGAGTCACA
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AB sequence
CTCTACCCTAAGCTCATGTGACTCCGCATT
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Marker sequence
GGCAGCCACCATAGCTACCATGGCCGTCCTCAACGCCAAATGCTTCACCA
AAGCATCTATTAACAACCCATCAAAGCCAAAACCCATCTCTCTTCTCTCC ATCCACAACCTCCCCAAAGGTCTCTTAACTTCAAAGCCCTCAAATTTATC CATCCCACTCACTGGAACCGCAATTGCAGGTGCCGTTTTCTCTACCCTAA GCTCATGTGACTCCGCATTTGCAGCTCAACAAATCGCAGAATTAGCTGAA GGAGGAGATAACAGGGGATTAGCACTGTTGCTACCATTGATCCCGGCTCT AGCCTGGGTTCTTTACAACATTCTTCAACCAGCACTAAACCAAATCAACA AAATGAGGAATCAAGGAGTTATAATCGGGCTTGGTCTTACAGGGCTTGCA GCAACAGGCTTCTTTAACACTCCAGAAGCCTCTGCTGCTACCGATATCGC CACGATTGCAGAATCAGCAAGTGATAACAGGGGACAACTTTTGCTGATTG TTGTAACACCTGCTTTGCTTTGGGTAGCTTACAACATTCTACAACCAGCT NTGAATCAGATTAATAAGATGAGATCAGATTGAGGATCATCAT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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