SGN Marker CT171

SGN-M157

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
1600
Vector
pBLUESC
Cutting Site
EcoR1
Drug Resistance
AMP
Image
Forward sequence
GAGAAGCGGATAAGACCAGAGGTTATACCTTCACATGAGATTGGAGTGACATTTGCAGATATTGGTGCCCTAGATGAAACTAAGGAATCA
CTTCAGGAGCTAGTCATGCTTCCTCTTAGAAGACCTGACCTCTTCAACGGTGGACTGCTTAAGCCTTGCAGAGGTATACTACTCTTTGGT
CCACCTGGCACTGGGAAGACTATGCTGGCCAAAGCAATAGCCAATGAAGCTGGAGCAAGCTTTATAAATGTCTCAATGTCAACCATTACT
TCAAAATGGTTTGGGGAAGATGAAAAGAATGTCCGAGCTCTTTTCACACTTGCAGCAAAGGTTTCTCCAACGATTGTTTTTGTGGATGAG
GTTGATAGCATGCTAGGGCAGCGGACAAGAGTTGGAGAACACGAGGCTATGCGAAAAATTAAGAATGAGTTTATGACTCATTGGGATGGA
TTA
Reverse sequence
not available
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1669285e-41224 (49.4% of RFLP seq)+
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38990)
Chromosome
3
Position
52.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Tomato-EXPEN 2000

Map: Tomato-EXHIR 1997   
Map version
32 (location: 8343)
Chromosome
3
Position
18.90 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXHIR 1997

Map: Tomato-EXPEN 1992   
Map version
28 (location: 8344)
Chromosome
3
Position
43.60 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992
Overgo hybridization and physical mapping 
CT171 was used as an overgo probe on plate 3 [well A9]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
GGAGCTAGTCATGCTTCCTCTTAG
B sequence
GAAGAGGTCAGGTCTTCTAAGAGG
AB sequence
GGAGCTAGTCATGCTTCCTCTTAGAAGACC
Marker sequence
GAGAAGCGGATAAGACCAGAGGTTATACCTTCACATGAGATTGGAGTGAC
ATTTGCAGATATTGGTGCCCTAGATGAAACTAAGGAATCACTTCAGGAGC
TAGTCATGCTTCCTCTTAGAAGACCTGACCTCTTCAACGGTGGACTGCTT
AAGCCTTGCAGAGGTATACTACTCTTTGGTCCACCTGGCACTGGGAAGAC
TATGCTGGCCAAAGCAATAGCCAATGAAGCTGGAGCAAGCTTTATAAATG
TCTCAATGTCAACCATTACTTCAAAATGGTTT
Genomic location of CT171  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D157 marker 157
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)