SGN Marker CT93

SGN-M159

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
200
Vector
pBLUESC
Cutting Site
EcoR1
Drug Resistance
AMP
Image
CT93 image not available
Forward sequence
TTTTTTTTTTTTTAAAGTGTCTGTTGTTTTCTCAGAATAATGGACTTATACGTCCAAACTTGTGTCTGTTGGGATTTGCAACGTCTGTGT
GCAATTTCTCAACTAGTCTTGCCTTTTGGTGTTCCACCAGAAGCCTTTTATGTTTCTGCACTTTGAATTGTGTCATGTTGTTGGTTTCTG
TTCCTGTTGCGTCTATTTATAAAAGTGTGTTTGTTTTGTGTAAAAAAAAAAAAAAAG
Reverse sequence
CTTTTTTTTTTTTTTTACACAAAACAAACACACTTTTATAAATAGACGCAACAGGAACAGAAACCAACAACATGACACAATTCAAAGTGC
AGAAACATAAAAGGCTTCTGGTGGAACACCAAAAGGCAAGACTAGTTGAGAAATTGCACACAGACGTTGCAAATCCCAACAGACACAAGT
TTGGACGTATAAGTCCATTATTCTGAGAAAACAACAGACACTTTAAAAAAAAAAAAA
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1699298e-23197 (83.1% of RFLP seq)+
SGN-U1603113.8e-74187 (78.9% of RFLP seq)+
SGN-U1431374e-114206 (86.9% of RFLP seq)+
SGN-U1699298e-23197 (83.1% of RFLP seq)-
SGN-U1603113.8e-74187 (78.9% of RFLP seq)-
SGN-U1431374e-114206 (86.9% of RFLP seq)-
Mapped locations  
Map: Tomato QTL map   
Map version
137 (location: 53754)
Chromosome
5
Position
31.30 cM
Confidence
uncalculated
Protocol
RFLP


Tomato QTL map

Map: Tomato-EXPIMP 2009   
Map version
126 (location: 53481)
Chromosome
5
Position
39.63 cM
Confidence
uncalculated
Protocol
RFLP


Tomato-EXPIMP 2009

Map: Tomato - Kazusa and SolCAP markers mapped to genome   
Map version
105 (location: 49351)
Chromosome
5
Position
4.65 MB
Confidence
uncalculated
Protocol
unknown


Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map   
Map version
103 (location: 47287)
Chromosome
5
Position
61.44 cM
Confidence
uncalculated
Protocol
unknown


Kazusa F2-2000 genetic map

Map: Sun1642 x LA1589   
Map version
85 (location: 43661)
Chromosome
5
Position
30.20 cM
Confidence
uncalculated
Protocol
RFLP


Sun1642 x LA1589

Map: Yellow Stuffer x LA1589   
Map version
83 (location: 43519)
Chromosome
5
Position
30.80 cM
Confidence
uncalculated
Protocol
RFLP


Yellow Stuffer x LA1589

Map: Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589   
Map version
79 (location: 43061)
Chromosome
5
Position
30.50 cM
Confidence
uncalculated
Protocol
RFLP


Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589

Map: Tomato-EXPIMP 2008   
Map version
55 (location: 40734)
Chromosome
5
Position
31.00 cM
Confidence
uncalculated
Protocol
RFLP


Tomato-EXPIMP 2008

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39083)
Chromosome
5
Position
49.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Tomato-EXPEN 2000

Map: Tomato-EXPEN 1992   
Map version
28 (location: 8353)
Chromosome
5
Position
30.10 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992

Map: Tomato-EXPIMP 2001   
Map version
26 (location: 8357)
Chromosome
5
Position
37.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Tomato-EXPIMP 2001
Overgo hybridization and physical mapping 
CT93 was used as an overgo probe on plate 5 [well E12]

Plausible BAC Matches:   P323F05,   P254G02

 Overgo Sequences

A sequence
CTCAACTAGTCTTGCCTTTTGGTG
B sequence
AAGGCTTCTGGTGGAACACCAAAA
AB sequence
CTCAACTAGTCTTGCCTTTTGGTGTTCCAC
Marker sequence
TTTTTTTTTTTTTAAAGTGTCTGTTGTTTTCTCAGAATAATGGACTTATA
CGTCCAAACTTGTGTCTGTTGGGATTTGCAACGTCTGTGTGCAATTTCTC
AACTAGTCTTGCCTTTTGGTGTTCCACCAGAAGCCTTTTATGTTTCTGCA
CTTTGAATTGTGTCATGTTGTTGGTTTCTGTTCCTGTTGCGTCTATTTAT
AAAAGTGTGTTTGTTTTGTGTAAAAAAAAAAAAAAAG
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of CT93  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D159 marker 159
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