SGN Marker T0965
SGN-M1686
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 11.07.03
Tomato EST read: TMEAU44TH
Arabidopsis best BAC match: AC009513.2
Arabidopsis position: 1.1270000
Arabidopsis identities: 0.804
Best GenBank protein hit: AAF06058.1
Evalue: 5.8e-74
Identities: 0.819
Description: Identical to gb|AF121355 peroxiredoxin TPx1 from Arabidopsis thaliana [Arabidopsis thaliana]
Comment: possibly involved in H2O2 detoxification
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEAU44TH
Arabidopsis best BAC match: AC009513.2
Arabidopsis position: 1.1270000
Arabidopsis identities: 0.804
Best GenBank protein hit: AAF06058.1
Evalue: 5.8e-74
Identities: 0.819
Description: Identical to gb|AF121355 peroxiredoxin TPx1 from Arabidopsis thaliana [Arabidopsis thaliana]
Comment: possibly involved in H2O2 detoxification
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0965 was used as an overgo probe on plate 8 [well E1]
Plausible BAC Matches: P289N20, P224F23, P047J15, P036A03, P150B09, P293I23, P041K06
Overgo Sequences
A sequence
GACCGTCTCAGTATACTCACTTGC
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B sequence
GACCTTCTTGCCCTTAGCAAGTGA
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AB sequence
GACCGTCTCAGTATACTCACTTGCTAAGGG
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Marker sequence
TGGCTCCAATCGCCGGTGGTGACGTCATCCCCGATGGTACCGTATCTTAC
TTCGACGAGCAAGATCAGATGCAGACCGTCTCAGTATACTCACTTGCTAA GGGCAAGAAGGTCATCATCTTCGCCGTTCCCGGAGCTTTCACTCCCACTT GCAGCATGAAGCATGTGCCTGGCTTTATTGAAAAGGCTGCTGAGTTGAAG TCAAAGGGTGTCGATGAAATCCTCTGCATCAGTGTCAATGACCCCTTTGT GATGAAGGCCTGGGCAAAAACTTACCCTGAGAACAAACATGTAAAATTTC TTGCTGATGGAGCTGGAAAATACACCCATGCCCTTGGGCTGGAGCTTGAT CTGTCGGATAAGGGGCTTGGTGTTCGATCACGAAGGTATGCTCTTTTGGT TGATGACCTTGAGGTGAAAGTAGCTAACATTGAATCTGGAGGGGAGTTCA CGGTCTCTCGTGCTGATGAAATCGGCAATGCTCTTTAAGCTTATCAC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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