SGN Marker T1063
SGN-M1734
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TFBAN19TH
Arabidopsis best BAC match: AL021636.3
Arabidopsis position: 4.1630000
Arabidopsis identities: 0.793
Best GenBank protein hit: CAB79924.1
Evalue: 5.4e-36
Identities: 0.788
Description: putative protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TFBAN19TH
Arabidopsis best BAC match: AL021636.3
Arabidopsis position: 4.1630000
Arabidopsis identities: 0.793
Best GenBank protein hit: CAB79924.1
Evalue: 5.4e-36
Identities: 0.788
Description: putative protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1063 was used as an overgo probe on plate 4 [well B5]
Plausible BAC Matches: P196C10, P029I22, P205L01, P113K13, P154O22, P235K16, P056G06, P331B11, P120F05, P009H10, P031D22, P052B21, P059C22, P216M17, P288A21, P336A18, P030K12, P265E13, P157P07, P286O16, P242H19, P191D05, P138F10, P164K01, P125H08
Overgo Sequences
A sequence
GTACACCATCGATCACAACCCAAC
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B sequence
TGGCTAAAATGGCGGAGTTGGGTT
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AB sequence
GTACACCATCGATCACAACCCAACTCCGCC
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Marker sequence
GGTCTGGTTTTGAAGTAAAGTATGCCATCTTGGTCGGATCTCCGGCGATG
TACACCATCGATCACAACCCAACTCCGCCATTTTAGCCATTTAAGTAGAA CTGATGGTCAGCAGGATCCAAAAAGTAGTTCAATATCTTTCCTCAAATGG ATTGGTGGAATCATTACCAGTTCCACTTTAGCTTTCGCATATTACTCCTA TAACTATTCTTCACCAAATTACCCATCTTTCTCTTTTTCCCACACATCAC AATCTCGACCAAGCTATCTCTTTGGAGATGCTTACAGAAGAAAAGTATTC TTTAATTATGAAAAGCGTATTAGGATGCGAAGTCCTCCTGAAAAGGTGTT TGAGTACTTTGCATCTTTTGAAGCCCATGATGGAGAAATATTTATGACAC CAGCAGATCTAATGAGAGCAGTTGTTCCGGTGTTCCCTCCATCTGAATCA CACCTCGTGAGAGATGGATATCTCAGAGGTGAAAGAAATCCGGGTGAATT GCGATGTGCCCCATCAAAA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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