SGN Marker T1072
SGN-M1742
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 98
Tomato EST read: TFBAN61TH
Arabidopsis best BAC match: AL133363.1
Arabidopsis position: 3.1149000
Arabidopsis identities: 0.489
Best GenBank protein hit: CAB62473.1
Evalue: 6.1e-50
Identities: 0.500
Description: putative protein [Arabidopsis thaliana]
Comment: 2nd match e-39 with polyneuridine aldehyde esterase [Rauvolfia serpentina] AAF22288
More information about COS markers can be found on the COS markers page.
Tomato EST read: TFBAN61TH
Arabidopsis best BAC match: AL133363.1
Arabidopsis position: 3.1149000
Arabidopsis identities: 0.489
Best GenBank protein hit: CAB62473.1
Evalue: 6.1e-50
Identities: 0.500
Description: putative protein [Arabidopsis thaliana]
Comment: 2nd match e-39 with polyneuridine aldehyde esterase [Rauvolfia serpentina] AAF22288
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T1072 was used as an overgo probe on plate 3 [well B5]
Plausible BAC Matches: P056M19, P013M07, P272C02, P076C17, P111M19, P162K04, P217P24, P306D03, P273H18, P327C24, P093A11, P323B04, P125O10, P288M13, P222D12, P147A24, P162G22, P288M14, P262M18, P111N18
Overgo Sequences
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A sequence
CCACCAACAAGTGCTATTTTTGGC
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B sequence
CTTGCATGTACTGTGGGCCAAAAA
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AB sequence
CCACCAACAAGTGCTATTTTTGGCCCACAG
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Marker sequence
GCTTTTAAGTAGCATTTATCTACACAATAATAATATGGAGAAAATTGGAG
GAATTAAAAGTTTTAACATGGAGAAAATTCCAAAGAAGCATTTTATCCTA GTTCATGGATTTTGTCATGGTTCTTGGTGTTGGTACAAAATTATCAATTT ATTGGAAAAATGTGGTCATAAAGTGACTGCTTTAGACCTTGGTGGTTGTG GAATTAATATGAAACAATTGAATGAAATTGATTCAATATTTGATTATATT CAACCTTTGATGGATCTTATGATATCTTTGTCTAAAGATGAAAAGATTAT TTTGGTTAGTCATAGTTACGGTGGTCTTTGTATTTCTCTTGCTATGGAAG CTTTCCCACACAAAATTTCAACAGGAGTGTTTATCTCTGCTTATATGCCT AATCATGTGGATCCACCTTCTCTTCTTATTCTTGAGTACTTCAAGAGGAC TTCAGTGGAGTCACTTATGGATTGCCAATTTAAGTTTGATCAAGGCATGG AAAATCCACCAACAAGTGCTATTTTTGGCCCACAGTACATGCAAGCTAAT CTTTACAAGAATTGCC |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T1072
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| User comments |
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