SGN Marker T1086
SGN-M1751
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 99
Tomato EST read: TFBAT58TH
Arabidopsis best BAC match: AC007584.3
Arabidopsis position: 2.1020000
Arabidopsis identities: 0.614
Best GenBank protein hit: AAD32914.1
Evalue: 6.5e-46
Identities: 0.666
Description: hypothetical protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TFBAT58TH
Arabidopsis best BAC match: AC007584.3
Arabidopsis position: 2.1020000
Arabidopsis identities: 0.614
Best GenBank protein hit: AAD32914.1
Evalue: 6.5e-46
Identities: 0.666
Description: hypothetical protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T1086 was used as an overgo probe on plate 6 [well C9]
Plausible BAC Matches: P034O02, P070P03, P122M13, P031M05, P255O20, P288D21, P174D19, P257C07, P223J13, P322O07, P332J07, P157K18, P277G02, P198F24, P239J12, P190L06, P062N06
Overgo Sequences
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A sequence
CTTGCTTGATGGGAATGGACATAG
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B sequence
AGCTGAAAATCCCGCTCTATGTCC
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AB sequence
CTTGCTTGATGGGAATGGACATAGAGCGGG
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Marker sequence
GCTCTAAACTACATGTGTTAGAGGAGAGACGGGAGAAGAGTCTGCCGCCG
ACGTTGATTCCTCTAACATCATCAGCCGGCACTGTTTTCTGATCACAACT CAAAGGTTGATTTTGGAGCATGATCAAGTATTAATTCGAGGGTTGATATG GAAGGTGTGAACGGTAAAAAAGTGGGGCATTTATGTGAAAATATTAGCAG CTTTGTTCGCCAATGTATATTTTCTATACTTAGTGTGGGTCCTGTTCCTA GTCACATTGCTTTTATCATGGATGGAAACCGTAGATATTCTAAGAAACAG AACTTGCTTGATGGGAATGGACATAGAGCGGGATTTTCAGCTCTTATCAA TATGCTAAAATATTGTTACGAGCTTGGTGTAAAATATATAACAGTTTATG CATTCAGCATTGATAACTTCAAGCGAAGGCCTGAAGAAGTTGTATCACTA ATGAAACTGATGCAGGAAAAAATTGATGAATTAACAAAAGAGGAGAGCAT TGTAAACCGCCTTGGTATTAGAATTTACTTTCAAGGAAACCTTAAACTTT TGAGTGACCATGTCAGGTTAGCCGCCGAGAGGGCTATGGTAAAGACATCA NGTAATTCANAAGCTATATTG |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T1086
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| User comments |
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