SGN Marker T1087

SGN-M1752
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis

SynonymsNone
Locus associationsNone
COS information 
MIPS Category: 99
Tomato EST read: TFBAT68TH
Arabidopsis best BAC match: AC006223.3
Arabidopsis position: 2.1810000
Arabidopsis identities: 0.604
Best GenBank protein hit: AAD39465.1
Evalue: 4.5e-71
Identities: 0.734
Description: PUR alpha-1 [Arabidopsis thaliana]
Comment: similarity with PUR-alpha too low
More information about COS markers can be found on the COS markers page.
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 39494)
Chromosome
1
Position
31.70 cM
Confidence
I
Protocol
RFLP


Tomato-EXPEN 2000
Overgo hybridization and physical mapping 
T1087 was used as an overgo probe on plate 9 [well C7]

Plausible BAC Matches:   P256E08,   P241F22,   P016P22,   P131H06,   P045I05,   P256P03,   P134B11,   P101A06,   P052G16,   P271K09,   P115M20,   P148M01,   P159L14,   P216I01,   P316M07,   P319E09

 Overgo Sequences

A sequence
CCAGTCACTCTTCTCAATCTGCTC
B sequence
GTCAAATCAGCTGTGGGAGCAGAT
AB sequence
CCAGTCACTCTTCTCAATCTGCTCCCACAG
Marker sequence
GGCGAGGGCGCTTTCTGAAGGTCTCTGAAGCATCTGTTAGCAGGAACCGT
AGTACCATTATTGTTCCAGCAGGAAGTGCCCGGGATGAGGGATGGGCAGC
ATTTAGGAATATTTTGGCAGAGATTAACGAAGCCTCAAGGCTATTTATTT
CGCCCAATCAGAGTTTGGAAACCTCAGAGCGTCTTGGGCTTTCAGATGAT
GTAGGAGCTGGTTTTATATCCAGTCACTCTTCTCAATCTGCTCCCACAGC
TGATTTGACTATTGAACGGACCATTGATTTGCCAGCAGCTGACGAAGTTA
GTGACGTGGGGGTCTCCAAAGTAATCAGGGTTGACCAGAAGAGGTTCTTC
TTTGATCTTGGGAATAACAATCGGGGCCATTTCTTACGAATATCGGAGGT
AGCAGGTTCTGACCGCTCTTCAATAATTCTTCCCCTTTCTGGCCTGAAAC
AATTTTATGACATGGTGGGTCACTTTGTAGAGATAAGCAAAGATCGCCTC
GAAGGAATTACAGGTGCAAATGTTCGGACAATTGACTCCCCACAGA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of T1087  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D1752 marker 1752
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