SGN Marker TG24

SGN-M177

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
2500
Vector
pUC
Cutting Site
PST1
Drug Resistance
AMP
Image
TG24 RFLP image
Forward sequence
ATGATGATATCTTGCAAGAATTTTTTCTTAGTACAGAACTGAAAATCTAACTAGATGGAGTATATGAATGGAAAACGGCAAAAAACTTGA
CGTATTAAAGTAAATCTAATCTATGATGATGGTATGTATTTGTGTTCAAATAAACTAATTGCAGGAACTTAAGTAACCTTGTTTGAGCGT
TCTCTTGTAAGTCGAAACTCACTCTTCCATGCACTTGATGGCACAGGAGTAACGGAAAATCCGGATGCAACTAACAAACCAATCCATAGT
CCATAGCCGAATCCTCCACTCCACCATCCCTTGATGCAGTAAAGATATATGATAAATAGTGTAACAACAAATTAAAACACAAATAAGATA
CACTAGAAAAGTTCTGTCGAAGTATTTAATGATGCAAACTTTCTTTTTTGAACAAGTAAATACTTAGATTGTTGAAACGATGTAAGGGTG
AAAATGTATGATGCCTATACTACCTACAGAATAGAGGAATAGAACATCACAA
Reverse sequence
GGCTGCAGAATTGCTGAAACAAGTGTGGGCTGCTTAGTGATAATAGTCGCCCCGGTTCTAACCATTAGGTTGGTAGTTTGAGTCACTAAA
GGTGGAGAAACAACGGGTAAGGGTAACCACATGTGATGCTCCTGGGGTTTGCATGGGGTTGGGTTAATCAAACAGCTAATAATTGCTTAT
TGGAGCTTACATGAGTTGAGTATGTATATCCATCAATCTCAAACCAAAGAAGGAAAAAAGAAAGATAAAATCTCGTGCTCTTAGGAGTTA
GTAACTTGTTTACTGTTTTATTTACCTCTAAATCTGAAGTGTACTTGTGTTGACTTCCTATTCCAATCTCCAGGTGTTTGATTCTCCTCA
CTTGAAGGTACTTGTTGGAAAAGGAGTGCGGAAACGCTTAGATGCAAAAGCTATTGTTCAGTTGCTTCAAAGTTTTGAAGCTCCGTTAGG
TACAACAAATGCTTTCATGTTGAAAGTCTTTCGTATATCTGTTCTTAACTTCCTCAGTTATCTGGTCTGAATGACTT
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1455922e-71135 (26.9% of RFLP seq)+
SGN-U1455921.1e-57116 (22.0% of RFLP seq)-
Mapped locations  
Map: Potato meta-QTL consensus map   
Map version
107 (location: 53230)
Chromosome
1
Position
37.09 cM
Confidence
uncalculated
Protocol
unknown

MQTL_1_Late_blight_1 MQTL_2_Late_blight_1
Potato meta-QTL consensus map

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39955)
Chromosome
1
Position
19.50 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 2000

Map: Pepper-AC99   
Map version
34 (location: 8451)
Chromosome
6
Position
69.97 cM
Confidence
uncalculated
Protocol
RFLP


Pepper-AC99

Map: Tomato-EXPEN 1992   
Map version
28 (location: 8449)
Chromosome
1
Position
8.90 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992

Map: Potato-TXB 1992   
Map version
27 (location: 8452)
Chromosome
1
Position
8.90 cM
Confidence
I(LOD2)
Protocol
RFLP


Potato-TXB 1992
Overgo hybridization and physical mapping 
TG24 was used as an overgo probe on plate 3 [well E9]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
CTCACTCTTCCATGCACTTGATGG
B sequence
TTCCGTTACTCCTGTGCCATCAAG
AB sequence
CTCACTCTTCCATGCACTTGATGGCACAGG
Marker sequence
ATGATGATATCTTGCAAGAATTTTTTCTTAGTACAGAACTGAAAATCTAA
CTAGATGGAGTATATGAATGGAAAACGGCAAAAAACTTGACGTATTAAAG
TAAATCTAATCTATGATGATGGTATGTATTTGTGTTCAAATAAACTAATT
GCAGGAACTTAAGTAACCTTGTTTGAGCGTTCTCTTGTAAGTCGAAACTC
ACTCTTCCATGCACTTGATGGCACAGGAGTAACGGAAAATCCGGATGCAA
CTAACAAACCAATCCATAGTCCATAGCCGAATCCTCCACTCCACCATCCC
TTGATGCAGTAAAGATATATGATAAATAGTGTAACAACAAATTAAAACAC
AAATAAGATACACTAGAAAAGTTCTGTCGAAGTATTTAATGATGCAAACT
TTCTTTTTTGAACAAGTAAATACTTAGATTGTTGAAACGATGTAAGGGTG
AAAATGTATGATGCCTATACTACCTACAGAATAGAGGAATAGAACATCAC
AA
Marker Submitted By 
Name: Molly Jahn
Organization: Cornell University
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of TG24  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D177 marker 177
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