SGN Marker TG549

SGN-M180

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
1800
Vector
pGEM4Z
Cutting Site
PST1
Drug Resistance
AMP
Image
TG549 RFLP image
Forward sequence
TAATTGTGTCTTGAAATGTACTTTTAGTTGAGGTAATATAGCATTCATTTCCAATGGAGAGAAGCTGGAACACAATCGCTTTCTACTAGT
CTATTTGTGCTTAGAGTAATTACAACTATCTCAGACCAAAAAAATAAAAATTAAAAATTACAACTATCTCTGCACCCTAGCTTTCAGTTT
TTATATGAAAGTTTGCTAATACTTGTTTATTTGGAATTTTATATATATAGGCCATACATACAGGATGGATCCATCCAAACATCAATCTTG
AGAACCCTGACAATGGCTTGGTATGTATCTGGTTAATTAATGCCCTCAGCTTTTTGAACAAGCTTGCACTCCCTATCTAATATTGATGCG
ATTAAGAAGCCATTGCATCTTAATCAGCTTTAATTAGTTAACTATGTTCTAATGTTGCTAAACATGATATTAGGATATGAATGTGCTGGT
GGGCTCTAAGAAGGAGCGCTTGG
Reverse sequence
TCAGGAGAAGACTTTTCTCCATTACTATGCACTTTTGGCGCAGCGGTTATGCATGATCAACAAAGTTCACCAGAAGAATTTTGAGAAATT
ATTCATGCAACAATACTCGATGATCCACCAACTTGAAACTAATAAACTGCGTAATGTGGCAAAGTTTTTTGCTCAATTACTAGGCACTGA
TGCACTGCCTTGGCATGTTTTGGCTTATTTAAGATTGACAGAAGAGGATACTACATCTTCTTCTCGTATATTCATCAAAATTTTATTCCA
GGAGTTGTCAGGGCACCTTGGCATCCATAAGCTGAATGAGCGTCTTAGTGACCCCTCTATGCAAGAGTCGTTTGAGTCGATATTTCCAAA
GGATAATCCTAAAAATGTGAGGTTTGCTATCAACTTTTTCACATCCATTGGTCTAGGTGGGATAACTGAAAATCTGCGAGACTATCTGAA
GAACATGCCAAGGCTCATCTTGCAGCAAGAG
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1470942.4e-1541 (8.7% of RFLP seq)+
SGN-U1470941.8e-2863 (13.3% of RFLP seq)+
SGN-U1725451.2e-29193 (40.1% of RFLP seq)-
Mapped locations  
Map: Tomato - Kazusa and SolCAP markers mapped to genome   
Map version
105 (location: 50406)
Chromosome
3
Position
64.12 MB
Confidence
uncalculated
Protocol
unknown


Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map   
Map version
103 (location: 48339)
Chromosome
3
Position
130.94 cM
Confidence
uncalculated
Protocol
unknown


Kazusa F2-2000 genetic map

Map: Tomato-EXPEN 2000   
Map version
52 (location: 40082)
Chromosome
3
Position
165.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Tomato-EXPEN 2000

Map: Tomato-EXPEN 1992   
Map version
28 (location: 8463)
Chromosome
3
Position
119.90 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992
Overgo hybridization and physical mapping 
TG549 was used as an overgo probe on plate 4 [well E11]

Plausible BAC Matches:   P109E21,   P174L04,   P222O02,   P321F01,   P159C06,   P126O06,   P121O11,   P094F12

 Overgo Sequences

A sequence
GCATTCATTTCCAATGGAGAGAAG
B sequence
AGCGATTGTGTTCCAGCTTCTCTC
AB sequence
GCATTCATTTCCAATGGAGAGAAGCTGGAA
Marker sequence
TAATTGTGTCTTGAAATGTACTTTTAGTTGAGGTAATATAGCATTCATTT
CCAATGGAGAGAAGCTGGAACACAATCGCTTTCTACTAGTCTATTTGTGC
TTAGAGTAATTACAACTATCTCAGACCAAAAAAATAAAAATTAAAAATTA
CAACTATCTCTGCACCCTAGCTTTCAGTTTTTATATGAAAGTTTGCTAAT
ACTTGTTTATTTGGAATTTTATATATATAGGCCATACATACAGGATGGAT
CCATCCAAACATCAATCTTGAGAACCCTGACAATGGCTTGGTATGTATCT
GGTTAATTAATGCCCTCAGCTTTTTGAACAAGCTTGCACTCCCTATCTAA
TATTGATGCGATTAAGAAGCCATTGCATCTTAATCAGCTTTAATTAGTTA
ACTATGTTCTAATGTTGCTAAACATGATATTAGGATATGAATGTGCTGGT
GGGCTCTAAGAAGGAGCGCTTGG
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of TG549  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D180 marker 180
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