SGN Marker T1161
SGN-M1806
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 3.16
Tomato EST read: TFBBJ25TH
Arabidopsis best BAC match: AC007727.2
Arabidopsis position: 1.0460000
Arabidopsis identities: 0.809
Best GenBank protein hit: AAD41422.1
Evalue: 8.1e-70
Identities: 0.914
Description: "Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo sapiens and is a member of PF|00004 ATPases associated with various cellular activities[Arabidopsis thaliana]"
Comment: replicative polymerase accessory protein
More information about COS markers can be found on the COS markers page.
Tomato EST read: TFBBJ25TH
Arabidopsis best BAC match: AC007727.2
Arabidopsis position: 1.0460000
Arabidopsis identities: 0.809
Best GenBank protein hit: AAD41422.1
Evalue: 8.1e-70
Identities: 0.914
Description: "Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo sapiens and is a member of PF|00004 ATPases associated with various cellular activities[Arabidopsis thaliana]"
Comment: replicative polymerase accessory protein
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T1161 was used as an overgo probe on plate 10 [well E1]
Plausible BAC Matches: P165I01, P257G10, P199K24, P218O08, P051P03, P227L05, P056J15, P318G17, P062I24, P317C10, P296A09, P033O16, P303A09, P006G15, P197I19, P333H02, P139H04, P041A01, P159M07
Overgo Sequences
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A sequence
ATCGACCGAAGCAAGTGAAGGATG
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B sequence
TCATCCTGGTGAGCTACATCCTTC
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AB sequence
ATCGACCGAAGCAAGTGAAGGATGTAGCTC
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Marker sequence
AGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATATCGACCGAAGCAAG
TGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACT CTCGAGACTTCTAACTGCCCGCATATGTTGTTATATGGTCCTCCTGGAAC TGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGGACCTG AGCTGTATAAATCGAGGGTATCGGAGCTAAATGCTAGTGATGACCGTGGT ATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGCTGCTGTAGG CTCTAATCGGCAAAGTGGTTATCCTTGCCCACCTTTTAAGATCATAATCC TTGATGAAGCAGATTCAATGACTCAAGATGCTCAAAATGCCTTGCGACGA ACTATGGAGACATATTCAAAA |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T1161
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| User comments |
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