SGN Marker T1211
SGN-M1837
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 1.01.10
Tomato EST read: TPTAA86TV
Arabidopsis best BAC match: AB018115.1
Arabidopsis position: 5.2160000
Arabidopsis identities: 0.652
Best GenBank protein hit: AAF73132.1
Evalue: 2.6e-65
Identities: 0.990
Description: "homogentisate 1,2-dioxygenase [Lycopersicon esculentum]"
Comment: catabolism of phenylalanine and tyrosine
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAA86TV
Arabidopsis best BAC match: AB018115.1
Arabidopsis position: 5.2160000
Arabidopsis identities: 0.652
Best GenBank protein hit: AAF73132.1
Evalue: 2.6e-65
Identities: 0.990
Description: "homogentisate 1,2-dioxygenase [Lycopersicon esculentum]"
Comment: catabolism of phenylalanine and tyrosine
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T1211 was used as an overgo probe on plate 5 [well C1]
Plausible BAC Matches: P033L11, P206N09, P092C16, P208O14, P173E06, P041I22, P336J04, P021L02, P077M10, P160M23
Overgo Sequences
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A sequence
GTGGACCAGCTTCATTTCCAAGTG
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B sequence
TTTGAGGCGACCATTGCACTTGGA
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AB sequence
GTGGACCAGCTTCATTTCCAAGTGCAATGG
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Marker sequence
AATATCAAACATTGCCATAAATCATTACTTAATTCATTGCTCTTGTAATT
GCAACAAGTATTTCCATGATAGTTCCATCTTTATATATATACAAAATGCA CCATAAACTACAAGTCTACATGCAACATCATCACGGTAACACATTTTTAC TTACGTCGCAATTTCATAGAACATTGGTTTCATCTTACCACTACATCCGC GCTTGGATCGTCACCCTAAACTTTCAATCTGATACTAACATAGGGTTTAT TCTATGTTTTACATGCCCGTGACTCGTTATGTACAAGCTAAGTCACTTTA GGAGGAACTACAGGAGCTAGCTGAACAATGAGCATTTCACCTTTCTATGG GTTTTCCTTTCTGCAAATCGACATTGTCTTCGTTCATAGATAGTCCTGAG AAGTGAGACTTCAAGCCAATCCAGCATTGATAATAATCGTGATCCATAAA CGGAGATTCAAGTGCCCACGGACAGACTCGGGGTATTAGGCAAGACTCAA ACATGAAAGCCATGGTATCAGCTATTCTATGTGGACCAGCTTCATTTCCA AGTGCAATGGTCGCCTCAAATGTTTTGGTATCAGGACCATGAGGAGTCAT GCAGCTGTGAAGGCTTGCCCCGCCAGGGTGAAAACCATCAGCTTTTGCCT CGTATCCCCCATAGATAA |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T1211
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| User comments |
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