Sol Genomics Network

SGN Marker CT234

SGN-M186

Synonyms

None

Locus associations

None

RFLP details

Insert size

800

Vector

pBLUESC

Cutting Site

EcoR1

Drug Resistance

AMP

Image

CT234 image not available

Forward sequence

ATACCACTACATAGAAGTAAGTCTCAAAGTTACAATAATAGCCACAAAGATGCTAATCTTCTAGCAAATGATGATTTTATTGAAGATGAG
CCTGTTCCCTTATCTCAAGTCAAGATAGGACAAGAATATGAAATTGTCCTCACTACTTTCACAGGTCTTTATCGGTATAGACTAGGGGAT
GTAGTAGAAGTTGCTGGTTTCCACAAGAAGACCCCCAAACTCAACTTTATATGCAGGAGAAAGCTGATATTAACAGTAAACATCGATAAG
AATACTGAACAGGACCTTCAGTTAGTGGTGGAGAGAGGTTCGCGAATACTAATAAGCAAGTCAAGAGCTGAGCTAGTAGACTTCACAAGC
CATGCAAATGTATCAAAAAGACCAGGTCATTATGTGATCTATTGGGAAATCAAAGGTGATGTTGATGAAAATGTTTTTGGAGAGTGTTGT
AGGGAGATGG

Reverse sequence

not available

RFLP sequence matches to unigenes

Unigene	e value	Match length (bp)	Strand
SGN-U144810	3.8e-17	48 (10.4% of RFLP seq)	+
SGN-U156301	4e-23	204 (44.3% of RFLP seq)	+
SGN-U144809		460 (100.0% of RFLP seq)	+

Mapped locations

Map: Tomato QTL map
Map version 137 (location: 53764)
Chromosome 10
Position 15.20 cM
Confidence uncalculated
Protocol RFLP
Subscript A

Tomato QTL map

Map: Tomato-EXPIMP 2009
Map version 126 (location: 53466)
Chromosome 10
Position 13.90 cM
Confidence uncalculated
Protocol RFLP

Tomato-EXPIMP 2009

Map: Potato meta-QTL consensus map
Map version 107 (location: 51886)
Chromosome 10
Position 41.66 cM
Confidence uncalculated
Protocol unknown

Potato meta-QTL consensus map

Map: Tomato - Kazusa and SolCAP markers mapped to genome
Map version 105 (location: 49336)
Chromosome 10
Position 2.64 MB
Confidence uncalculated
Protocol unknown

Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map
Map version 103 (location: 47273)
Chromosome 10
Position 22.86 cM
Confidence uncalculated
Protocol unknown

Kazusa F2-2000 genetic map

Map: Sun1642 x LA1589
Map version 85 (location: 43649)
Chromosome 10
Position 16.10 cM
Confidence uncalculated
Protocol RFLP

Sun1642 x LA1589

Map: Yellow Stuffer x LA1589
Map version 83 (location: 43507)
Chromosome 10
Position 19.80 cM
Confidence uncalculated
Protocol RFLP

Yellow Stuffer x LA1589

Map: Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589
Map version 79 (location: 43048)
Chromosome 10
Position 18.80 cM
Confidence uncalculated
Protocol RFLP

Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589

Map: Pepper Capsicum
Map version 65 (location: 42700)
Chromosome 10
Position 33.70 cM
Confidence uncalculated
Protocol RFLP

Pepper Capsicum

Map: Tomato-EXPIMP 2008
Map version 55 (location: 40752)
Chromosome 10
Position 11.00 cM
Confidence uncalculated
Protocol RFLP

Tomato-EXPIMP 2008

Map: Tomato-EXPEN 2000
Map version 52 (location: 39029)
Chromosome 10
Position 22.00 cM
Confidence F(LOD3)
Protocol RFLP

Tomato-EXPEN 2000

Map: Tomato-EXHIR 1997
Map version 32 (location: 8486)
Chromosome 10
Position 13.60 cM
Confidence I(LOD2)
Protocol RFLP

Tomato-EXHIR 1997

Map: Tomato-EXPEN 1992
Map version 28 (location: 8487)
Chromosome 10
Position 20.80 cM
Confidence I(LOD2)
Protocol RFLP

Tomato-EXPEN 1992

Map: Tomato-EXPIMP 2001
Map version 26 (location: 8491)
Chromosome 10
Position 25.00 cM
Confidence F(LOD3)
Protocol RFLP

Tomato-EXPIMP 2001

Overgo hybridization and physical mapping

CT234 was used as an overgo probe on plate 14 [well F1]

Plausible BAC Matches: None

Overgo Sequences

A sequence

GCAAGTCAAGAGCTGAGCTAGTAG

B sequence

GCATGGCTTGTGAAGTCTACTAGC

AB sequence

GCAAGTCAAGAGCTGAGCTAGTAGACTTCA

Marker sequence

ATACCACTACATAGAAGTAAGTCTCAAAGTTACAATAATAGCCACAAAGA
TGCTAATCTTCTAGCAAATGATGATTTTATTGAAGATGAGCCTGTTCCCT
TATCTCAAGTCAAGATAGGACAAGAATATGAAATTGTCCTCACTACTTTC
ACAGGTCTTTATCGGTATAGACTAGGGGATGTAGTAGAAGTTGCTGGTTT
CCACAAGAAGACCCCCAAACTCAACTTTATATGCAGGAGAAAGCTGATAT
TAACAGTAAACATCGATAAGAATACTGAACAGGACCTTCAGTTAGTGGTG
GAGAGAGGTTCGCGAATACTAATAAGCAAGTCAAGAGCTGAGCTAGTAGA
CTTCACAAGCCATGCAAATGTATCAAAAAGACCAGGTCATTATGTGATCT
ATTGGGAAATCAAAGGTGATGTTGATGAAAATGTTTTTGGAGAGTGTTGT
AGGGAGATGG

Genomic location of CT234

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D186 marker 186