SGN Marker T1319
SGN-M1923
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TPTAN09TH
Arabidopsis best BAC match: AC005292.4
Arabidopsis position: 1.0510000
Arabidopsis identities: 0.743
Best GenBank protein hit: AAF86997.1
Evalue: 1.5e-83
Identities: 0.761
Description: hypothetical protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAN09TH
Arabidopsis best BAC match: AC005292.4
Arabidopsis position: 1.0510000
Arabidopsis identities: 0.743
Best GenBank protein hit: AAF86997.1
Evalue: 1.5e-83
Identities: 0.761
Description: hypothetical protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1319 was used as an overgo probe on plate 12 [well D2]
Plausible BAC Matches: P011M24, P282A06
Non-Plausible BAC matches
Overgo Sequences
A sequence
TCAGATGCAAGACCCTGGGATATC
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B sequence
AAGAGTAAGCTGGGTGGATATCCC
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AB sequence
TCAGATGCAAGACCCTGGGATATCCACCCA
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Marker sequence
GAACATCACAATCTGGGACAACTAATTCTTTTGACGGGCAGAAACCTTAT
TATCAGATGCAAGACCCTGGGATATCCACCCAGCTTACTCTTGAAACAGC TGTCATAGAATTACTTTCTCTTCCTGTTTCACCATCACAGATTGTCTCAT CTCTAGTTCAAATTGTTGTTCACATACAACCAACCCTTGTTCAATCCAGC AACGGGCTGCATGGAGCTGCTGGTAGTTCAGGACAAGGCTCTATTTTGCC TACTTCTCCTTCAGGAGGAAGCACTGATTCTTTGGGTGCAACTAGGACGA CTCCATCACTTTCAGGATTGAATACTTCTAATTTTGTTTCACGCAGTGGT TATACTTGCCAGCAGCTGTCTTGCTTGTTAATCCAAGCATGTGGTCTTCT TTTGGCACAACTTCCTCCAGAATTTCATGTGCAGCTATATGTTGAAGCTG CACGCATAATAAAAGAAAGTTGGTGGCTTACTGATGCTAAAAGGTCTGTG GGTGAATTAGAATCGGCTGTTAGTTATGCTCTACTAGATCCCACCTGGGC TGCACAGGATAATACCTCAACAGCCATTGGTAATATTGTCGCACTGCTAC ATGCTTTCTTCTGTAACCTCCCACAAGAATGGCTCGAGGGAACTCATCTT ATCATT |
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User comments |
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