SGN Marker T1355
SGN-M1947
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TPTAO86TH
Arabidopsis best BAC match: AC025295.5
Arabidopsis position: 1.0640900
Arabidopsis identities: 0.802
Best GenBank protein hit: AAD15333.1
Evalue: 1.6e-38
Identities: 0.388
Description: hypothetical protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAO86TH
Arabidopsis best BAC match: AC025295.5
Arabidopsis position: 1.0640900
Arabidopsis identities: 0.802
Best GenBank protein hit: AAD15333.1
Evalue: 1.6e-38
Identities: 0.388
Description: hypothetical protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1355 was used as an overgo probe on plate 7 [well E10]
Plausible BAC Matches: P213E05, P005H23, P134B02, P140K02, P097P15, P307B24, P001C13, P179B17, P321H10, P079C10
Overgo Sequences
A sequence
CTGGGTGGAACTCTATTCACTTCC
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B sequence
GCTCGATGCTCTTGAAGGAAGTGA
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AB sequence
CTGGGTGGAACTCTATTCACTTCCTTCAAG
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Marker sequence
GGTCAAGACAGTGCTAGAAGCGTATTTACCTCAACTTGCACTTATCTTAT
TTTTGGCTTTGTTGCCAAAGTTTCTTCTGTTTCTATCCAAAGCAGAGGGC ATCCCATCAGAAAGCCACGTGACAAGAGCTGCTTCAGGGAAATATTTTTA TTTCACCGTGTTGAATGTATTTATTGGTGTTACTCTGGGTGGAACTCTAT TCACTTCCTTCAAGAGCATCGAGCATGATCCCAACTCTATTTTTCGTGTG TTGGCAAAAAGCCTTCCACAGAATGCAACTTTCTTCTTGACTTTTGTGGC TTTGAAATTCTTTGTTGGCTACGGGCTGGAACTATCTAGAATAGTTCCTC TAATCATATTCCATCTCAAGAAGAAGTATTTGTGCAAAACTGAAGCTGAG ATAAAGGAGGCTTGGGCTCCTGGTGATCTAGGCTATGCAACTCGATTTCC CAATGATATGCTGATTATGACGATTGTCCTATGCTATTCCGTCATAGCTC CAATAATTATTCCGTTTGGTGTGGTATACTTTGGTCTAGGGTGGCTTCTT CTCCGGAATCAGGCACTCAAAGTGTATGTTCCCTCATTCGAGAGCTACGG AAAGATGTGGCCCCATATTTACACGCGCATGATAGCTACCTTGATTTTGT ATCAAGTTACCATGTTAGGTTACTTTGGTGTT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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