SGN Marker T1355
SGN-M1947
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 99
Tomato EST read: TPTAO86TH
Arabidopsis best BAC match: AC025295.5
Arabidopsis position: 1.0640900
Arabidopsis identities: 0.802
Best GenBank protein hit: AAD15333.1
Evalue: 1.6e-38
Identities: 0.388
Description: hypothetical protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAO86TH
Arabidopsis best BAC match: AC025295.5
Arabidopsis position: 1.0640900
Arabidopsis identities: 0.802
Best GenBank protein hit: AAD15333.1
Evalue: 1.6e-38
Identities: 0.388
Description: hypothetical protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
 Mapped locations
|
Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T1355 was used as an overgo probe on plate 7 [well E10]
Plausible BAC Matches: P005H23, P097P15, P001C13, P307B24, P140K02, P321H10, P213E05, P179B17, P134B02, P079C10
Overgo Sequences
|
A sequence
CTGGGTGGAACTCTATTCACTTCC
|
|
B sequence
GCTCGATGCTCTTGAAGGAAGTGA
|
|
AB sequence
CTGGGTGGAACTCTATTCACTTCCTTCAAG
|
|
Marker sequence
GGTCAAGACAGTGCTAGAAGCGTATTTACCTCAACTTGCACTTATCTTAT
TTTTGGCTTTGTTGCCAAAGTTTCTTCTGTTTCTATCCAAAGCAGAGGGC ATCCCATCAGAAAGCCACGTGACAAGAGCTGCTTCAGGGAAATATTTTTA TTTCACCGTGTTGAATGTATTTATTGGTGTTACTCTGGGTGGAACTCTAT TCACTTCCTTCAAGAGCATCGAGCATGATCCCAACTCTATTTTTCGTGTG TTGGCAAAAAGCCTTCCACAGAATGCAACTTTCTTCTTGACTTTTGTGGC TTTGAAATTCTTTGTTGGCTACGGGCTGGAACTATCTAGAATAGTTCCTC TAATCATATTCCATCTCAAGAAGAAGTATTTGTGCAAAACTGAAGCTGAG ATAAAGGAGGCTTGGGCTCCTGGTGATCTAGGCTATGCAACTCGATTTCC CAATGATATGCTGATTATGACGATTGTCCTATGCTATTCCGTCATAGCTC CAATAATTATTCCGTTTGGTGTGGTATACTTTGGTCTAGGGTGGCTTCTT CTCCGGAATCAGGCACTCAAAGTGTATGTTCCCTCATTCGAGAGCTACGG AAAGATGTGGCCCCATATTTACACGCGCATGATAGCTACCTTGATTTTGT ATCAAGTTACCATGTTAGGTTACTTTGGTGTT |
| Related Markers
|
Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T1355
|
| User comments |
Please wait, checking for comments. (If comments do not show up, access them here)
Working
