SGN Marker T1366

SGN-M1956
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis

SynonymsNone
Locus associationsNone
COS information 
MIPS Category: 99
Tomato EST read: TPTAQ08TH
Arabidopsis best BAC match: AB022219.1
Arabidopsis position: 3.0450000
Arabidopsis identities: 0.906
Best GenBank protein hit: BAB10754.1
Evalue: 3.8e-65
Identities: 0.920
Description: unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Mapped locations  
Map: Tomato - Kazusa and SolCAP markers mapped to genome   
Map version
105 (location: 49427)
Chromosome
7
Position
63.22 MB
Confidence
uncalculated
Protocol
unknown


Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map   
Map version
103 (location: 47361)
Chromosome
7
Position
72.07 cM
Confidence
uncalculated
Protocol
unknown


Kazusa F2-2000 genetic map

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39594)
Chromosome
7
Position
71.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Tomato-EXPEN 2000
Overgo hybridization and physical mapping 
T1366 was used as an overgo probe on plate 8 [well A9]

Plausible BAC Matches:   None

 Non-Plausible BAC matches

P289M04,   P140O20,   P249O17,   P203L07,   P089I03

 Overgo Sequences

A sequence
TAAGTTGCCCGAGAACAGGGAATG
B sequence
GGCTTTGCAATCTGCACATTCCCT
AB sequence
TAAGTTGCCCGAGAACAGGGAATGTGCAGA
Marker sequence
CTTTTGATAGATATTTACGCGTCGGAGAGGGGAGGAATCAGATCGGCGAT
TTTTATTTTCCGATAGCTTCTCTCTCCGTCGGTTAATTCGCTTAAACCCT
TGCTATCGTCATCATGAATGAGAAGGCTAATGTTACTAAAGAGCTTAATG
CGAAGCATAGAAAGATACTAGAAGGACTTCTTAAGTTGCCCGAGAACAGG
GAATGTGCAGATTGCAAAGCCAAGGGTCCTAGATGGGCAAGCGTGAACCT
GGGAATATTTATATGCATGCAATGCTCTGGGATCCACAGAAGCCTGGGGG
TGCACATATCAAAGGTCAGATCAGCTACACTAGACACATGGCTTCCTGAA
CAAGTTGCATTTATCCATTCAATGGGAAATGAGAGGTCAAATAGTTATTG
GGAAGCAGAGCTGCCTCCAAATTATGATAGAGTTGGTATTGAGAATTTCA
TCCGAGCAAAATATGAAGAGAAGAGGTGGGTCCCTAAAGATGGGATTC
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of T1366  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D1956 marker 1956
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