SGN Marker T1551
SGN-M2090
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 98
Tomato EST read: TPTBB57TH
Arabidopsis best BAC match: AC008007.7
Arabidopsis position: 1.0940000
Arabidopsis identities: 0.636
Best GenBank protein hit: BAA97063.1
Evalue: 4.8e-67
Identities: 0.836
Description: "contains similarity to DAG protein, chloroplast precursor~gene_id:K15M2.14 [Arabidopsis thaliana]"
Comment: unclear
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTBB57TH
Arabidopsis best BAC match: AC008007.7
Arabidopsis position: 1.0940000
Arabidopsis identities: 0.636
Best GenBank protein hit: BAA97063.1
Evalue: 4.8e-67
Identities: 0.836
Description: "contains similarity to DAG protein, chloroplast precursor~gene_id:K15M2.14 [Arabidopsis thaliana]"
Comment: unclear
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1551 was used as an overgo probe on plate 15 [well F6]
Plausible BAC Matches: P275L04, P276B16
Overgo Sequences
A sequence
TTGAGCACTGGCTTGTTGTGATGG
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B sequence
TCACCTTCAGGCTTCTCCATCACA
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AB sequence
TTGAGCACTGGCTTGTTGTGATGGAGAAGC
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Marker sequence
AGCAGAAATGGCGACTCGTTATCTTACTCGTTCTCTACTCACTACTCTCT
CTCGCTCATACACTACTGTTTCTCTCTCTACACCTCTTCCATCTTCTTTC TCTCTCCTCCGGTTTCGTCCTCTCATCGCCGTCGCAGCGAATCTTCGAAC CTTTACTCCGGCAACGTTAACGGCGGCGACGTCGTTGAGAGGTTTCGCGA CTCGTCAAACGTCGTCGTCGTTGAATGACCCGAACCCGAACTGGTCTAAT CGTCCACCGAAGGAGACGATTTTGCTTGATGGATGTGATTTTGAGCACTG GCTTGTTGTGATGGAGAAGCCTGAAGGTGATCCTACAAGAGATGAGATTA TTGATAGGTACATCAAAACTCTTGCTACGATTGTCGGAAGCGAGGAGGAA GCAAGAATGAAGATCTACTCTGTCTCGACAAGACATTACTTTGCATTTGG AGCTCTTGTATCCGAAGAACTTTCTTACAAGCTCAAAGAATTGCCAAAGG GTAGATGGGTGCTTCCTGATTCCTACCTGGATGTTAAAAATAAAGATTAT GGAGGAGAACCTTTTATTAATGGGCAGGCTGTACCATATGACCCGAAATA CCAC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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