SGN Marker T1576
SGN-M2107
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 99
Tomato EST read: TPTBD02TH
Arabidopsis best BAC match: AB008264.1
Arabidopsis position: 5.1350000
Arabidopsis identities: 0.724
Best GenBank protein hit: BAB09197.1
Evalue: 1.0e-21
Identities: 0.537
Description: similar to unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTBD02TH
Arabidopsis best BAC match: AB008264.1
Arabidopsis position: 5.1350000
Arabidopsis identities: 0.724
Best GenBank protein hit: BAB09197.1
Evalue: 1.0e-21
Identities: 0.537
Description: similar to unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T1576 was used as an overgo probe on plate 6 [well D11]
Plausible BAC Matches: None
Overgo Sequences
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A sequence
AACCCTCAAAACCCACATGCTTGC
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B sequence
TCCTTTAGGATGTCCCGCAAGCAT
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AB sequence
AACCCTCAAAACCCACATGCTTGCGGGACA
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Marker sequence
GAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGAT
GATGACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATC TGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAGTGCCCACAGCTGCTT CCGAGATGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGT CAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTC GCTAGGAGATTTTGCTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTA TTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACA TGCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTTGACA GCAGCATATACCAGTGCCAACACAGAAATCTGTG |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T1576
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| User comments |
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