SGN Marker T1720
SGN-M2222
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 7.01
Tomato EST read: TRZBI10TH
Arabidopsis best BAC match: AL132962.1
Arabidopsis position: 3.2500000
Arabidopsis identities: 0.895
Best GenBank protein hit: CAB54830.1
Evalue: 8.0e-79
Identities: 0.848
Description: putative beta-subunit of K+ channels [Solanum tuberosum]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRZBI10TH
Arabidopsis best BAC match: AL132962.1
Arabidopsis position: 3.2500000
Arabidopsis identities: 0.895
Best GenBank protein hit: CAB54830.1
Evalue: 8.0e-79
Identities: 0.848
Description: putative beta-subunit of K+ channels [Solanum tuberosum]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1720 was used as an overgo probe on plate 16 [well F2]
Plausible BAC Matches: P117P21, P249J09, P189F19, P310A03, P240C22, P313H15, P006M18, P065C04, P313L03, P201C12, P314N19, P214C05, P273K06, P140P23, P331B05, P105E23, P046B18, P309G23
Non-Plausible BAC matches
Overgo Sequences
A sequence
AACATGGCTAGGGAGTTGGCATTG
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B sequence
CCATAAGGCCTTCCTTCAATGCCA
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AB sequence
AACATGGCTAGGGAGTTGGCATTGAAGGAA
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Marker sequence
GGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTA
TATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTTCATTTTGAGA CTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTT GTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCT GAAATCGAAAAATCCTAATGTCAAGATATATGGAATCGAGCCAGCTGAAA GCAATGTATTGAATGGTGGAAAACCAGGTCCTCATGAAATAACTGGCAAT GGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGT TCTGATGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCAT TGAAGGAAGGCCTTATGGTTGGTATATCATCAGGAGCAAATACTGTAGCC GCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGAC AATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAG ATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGT TCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAG |
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