SGN Marker T1737
SGN-M2234
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 99
Tomato EST read: TRZBJ51TH
Arabidopsis best BAC match: AL049914.1
Arabidopsis position: 4.1580000
Arabidopsis identities: 0.686
Best GenBank protein hit: CAB79831.1
Evalue: 6.8e-29
Identities: 0.686
Description: putative protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRZBJ51TH
Arabidopsis best BAC match: AL049914.1
Arabidopsis position: 4.1580000
Arabidopsis identities: 0.686
Best GenBank protein hit: CAB79831.1
Evalue: 6.8e-29
Identities: 0.686
Description: putative protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Tomato - Kazusa and SolCAP markers mapped to genome |
|  Kazusa F2-2000 genetic map |
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
T1737 was used as an overgo probe on plate 1 [well E4]
Plausible BAC Matches: P144K24, P322F18, P317P02, P151P10, P148N01
Overgo Sequences
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A sequence
TCACGAGCGTTATCAGCCAACATC
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B sequence
TCTGGTTGGTGGCTTTGATGTTGG
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AB sequence
TCACGAGCGTTATCAGCCAACATCAAAGCC
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Marker sequence
ACGGAAAACAATCCATATATTTTATTATACTTAGAAAGGCAGGAAAACAT
GTTTTTTTTACAGTTTGTGCTGAAAGTTCATTTTGCAACATCCCATTTAA CAAAGAGAGAGTAGAAAGGCTTAAGCACTGGTCTTGATAATTTCATCATC TGCATAACTTGCTTTCGGCTCGCCCTTGATATCCGTTTCTTGGAAATAAT CCTCACGAGCGTTATCAGCCAACATCAAAGCCACCAACCAGAAGAGCGCG GAATCAAGAGACAAGAAGGCACCTCCACCTAAAAGACCGGTCTTGGCAGT TGGGCAATCGGTCTGCAAGTTGTGATGAATGTTGCGTGTGATATGAAGTT GCTCGGTGATTGTAGGCCACAACAACAATGTTGCTGCTAAACCAGTTGTG CCCAATGCAATATTTAAGAACACGAGGAA |
| Genomic location of T1737
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| User comments |
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