SGN Marker cTOB-5-D22

SGN-M2916

SynonymsNone
Locus associationsNone
Derivations 
This marker was derived from EST clone SGN-C122697
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 40496)
Chromosome
1
Position
44.50 cM
Confidence
I(LOD2)
Protocol
RFLP
Subscript
A


Tomato-EXPEN 2000

Map: Tomato-EXPEN 2000   
Map version
52 (location: 40497)
Chromosome
7
Position
43.50 cM
Confidence
I
Protocol
RFLP
Subscript
B


Tomato-EXPEN 2000
Overgo hybridization and physical mapping 
cTOB-5-D22 was used as an overgo probe on plate 8 [well F10]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
GAATGGGAAGACAGCTATCTGCTC
B sequence
GTTGGATCCAATCCCAGAGCAGAT
AB sequence
GAATGGGAAGACAGCTATCTGCTCTGGGAT
Marker sequence
TGGGGNNNNNAAGGCNNNNGTTTCTGATTCAACGAAAAATGCTGGAGCTC
CACTGCGGTGGCGGCTGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGA
ATTCGGCACGAGGGAGAGAACTAGTCTCGAGTTTTTTTTGCAAGCCTTAA
GGAAGCACTATCTATTAGCCAATGAAGAGTGGAAGGAAGATATAATGCCT
GAAATTTTAGATGGGCACAATGTCTATGACTTTGTTGACCCTGATATCTT
ACAAAGGCTTGAAGAATTGGAGAGAGAAGAAGGTCTTCGTCAAGAGGAAG
AAGGAGATGATGATTTTGAGATGGACGGTGCAGAGCTGACCCCTGAAGAA
CAAGCAGCATTAGCTGAAATCCGAAAAAAGAAAAGTTTGCTCATTCAGCA
GCATAGAGTGAAGAAGAGCACCGCAGAGAGCAGGCCCACAGTACCAAGAA
AGTTTGATAAAGACAAGGAATTTACTTCAAAAAGAATGGGAAGACAGCTA
TCTGCTCTGGGATTGGATCCAACTCTAGCAATCAATCGAGCTCGAAGTAA
GTCAAGGGGTCGTAAGCGAGAGAGATCAGTTGAATGTGGAGATGACAATG
GTNATGATGCAATGGATGTTGATGAGATTACTCCCAGCAAGAAGCAACGT
AGGTCTAGATCACTTTCCATGGCAAGATCAAGGTCAATGTCACGACCTCG
AAGTGAATTTGGTCCAGGGGGGGGCTTCAGGACCAACCCCCAAAGGAGCC
CGCTATAAAATTGTTTAAAAAACCTGCTAATAAAAGGACCAAGGATGCTC
CTCCGGGGAGAGTCCAATAAAGCCATTCCTACCTTGAAACCCGAAACATC
TCTTTTTTTGGAAGAGAACAAGGGGCAAAACTGACAGGCCGGGTTCCCCA
AAAAAGGCCTTTTTCCCTCCTGCCGGAGAAA

cTOB-5-D22 was used as an overgo probe on plate 9 [well C1]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
GAATGGGAAGACAGCTATCTGCTC
B sequence
GTTGGATCCAATCCCAGAGCAGAT
AB sequence
GAATGGGAAGACAGCTATCTGCTCTGGGAT
Marker sequence
TGGGGNNNNNAAGGCNNNNGTTTCTGATTCAACGAAAAATGCTGGAGCTC
CACTGCGGTGGCGGCTGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGA
ATTCGGCACGAGGGAGAGAACTAGTCTCGAGTTTTTTTTGCAAGCCTTAA
GGAAGCACTATCTATTAGCCAATGAAGAGTGGAAGGAAGATATAATGCCT
GAAATTTTAGATGGGCACAATGTCTATGACTTTGTTGACCCTGATATCTT
ACAAAGGCTTGAAGAATTGGAGAGAGAAGAAGGTCTTCGTCAAGAGGAAG
AAGGAGATGATGATTTTGAGATGGACGGTGCAGAGCTGACCCCTGAAGAA
CAAGCAGCATTAGCTGAAATCCGAAAAAAGAAAAGTTTGCTCATTCAGCA
GCATAGAGTGAAGAAGAGCACCGCAGAGAGCAGGCCCACAGTACCAAGAA
AGTTTGATAAAGACAAGGAATTTACTTCAAAAAGAATGGGAAGACAGCTA
TCTGCTCTGGGATTGGATCCAACTCTAGCAATCAATCGAGCTCGAAGTAA
GTCAAGGGGTCGTAAGCGAGAGAGATCAGTTGAATGTGGAGATGACAATG
GTNATGATGCAATGGATGTTGATGAGATTACTCCCAGCAAGAAGCAACGT
AGGTCTAGATCACTTTCCATGGCAAGATCAAGGTCAATGTCACGACCTCG
AAGTGAATTTGGTCCAGGGGGGGGCTTCAGGACCAACCCCCAAAGGAGCC
CGCTATAAAATTGTTTAAAAAACCTGCTAATAAAAGGACCAAGGATGCTC
CTCCGGGGAGAGTCCAATAAAGCCATTCCTACCTTGAAACCCGAAACATC
TCTTTTTTTGGAAGAGAACAAGGGGCAAAACTGACAGGCCGGGTTCCCCA
AAAAAGGCCTTTTTCCCTCCTGCCGGAGAAA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of cTOB-5-D22  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D2916 marker 2916
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