SGN Marker TG287
SGN-M31
Synonyms |
Locus associations |
RFLP details |
Insert size
1400
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image
TG287 image not available
|
Forward sequence
ACACTATACTCGATCGCTAGTTGAATCAGCTGTTCGAGCCTGGAGGACAAAATACCCTACTTCTAAAGTTGATGATTGTGCAGTTGTTTG
CCTTTTTCTTGATTCAAACTCAAACAACTTGTCCACTGCTTCCAATACAGAAGACAGTGACAAGACTGTCTCAATGAAAGCAAATGAAGT TGGTGCCAAGACAGGTGATGCCTCAGGTCCAACTGCATTTACTCGTTCTGGAACTGTTCGAGAAGTTGAAGTTTCAGAAGAAGAGATAGA GGAAGCATCAGAACATGAGGAACTGCTCTCAGAGGTGGGGGCGGAATGGTCTGCACTGGAAGGGGTTTCCCGGCTGAACACATTATTGAC ACTGCCAAGGTTTGTGCCTGACAAGGACGAGAATTAAACTGTCTGGAATCGAACTCAAAGAAGCAACAGAGGGTGAGATTTCCAAGTTTG GATTTATTTCTTTCGGTTATTTTTCAATTTTTATTTAGTTCCATCCATTTTAAGGTCTCACATATCTATCTACTGGGAGGGAAAAAAAAT AGGGGCAT |
Reverse sequence
CTGCCAAACGATTGGTACAATGATAAATTCATGGGATTTGCCATCTGTGTGGTGTCTGACCAAGAAACAACATGGTTATCAGTTCATGAA
GGTTACCTACAGGAAATGCCAGGCATTTCGATTGAGTTTACAATCAAAAGCCACCTACGGAGGAGCACGAGTTGCCTAATGAACATTGGT TTTGTAGGGACAAACAAGAATGTTGCTTCAGATCACACATGCCTTGCCTATGTGGCATTTGAAGAATACTGGTCAATGTACAAAAACCAC TTAGACACCCCAAACAATTGGTATCAAATCGATTTTTCTGCAAACTCATTGAGGAAACATATATTCCTAAAAAGTTGGGGAATTCGTCTA GTGTACACTGATGACTTACAGAGTTTCACATCTTGAGCGATTTCCAGATGAGGTGTGTTCTCTCTGCTTTATATGCATGCCTGGCTTTTG TAAGTATTTTGAAAATAATAAAGCAAATGTTATACTAAAACATCTCAACCCCATATATTAACAAAGTGCAAACGTTGATCAAAGAGATAC GA |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U152320 | 2.5e-06 | 62 (11.3% of RFLP seq) | + |
SGN-U157288 | 1.6e-07 | 28 (5.1% of RFLP seq) | + |
SGN-U153409 | 1.6e-07 | 88 (16.1% of RFLP seq) | + |
SGN-U157288 | 394 (71.9% of RFLP seq) | + |
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| ![]() Tomato QTL map |
| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Tomato-EXPEN 2000 |
| ![]() Tomato-EXHIR 1997 |
| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
TG287 was used as an overgo probe on plate 7 [well F4]
Plausible BAC Matches: P073B21, P104E04, P204J24, P111N17, P080D03, P325C20, P332A15, P042P08
Overgo Sequences
A sequence
CGCTAGTTGAATCAGCTGTTCGAG
|
B sequence
TATTTTGTCCTCCAGGCTCGAACA
|
AB sequence
CGCTAGTTGAATCAGCTGTTCGAGCCTGGA
|
Marker sequence
ACACTATACTCGATCGCTAGTTGAATCAGCTGTTCGAGCCTGGAGGACAA
AATACCCTACTTCTAAAGTTGATGATTGTGCAGTTGTTTGCCTTTTTCTT GATTCAAACTCAAACAACTTGTCCACTGCTTCCAATACAGAAGACAGTGA CAAGACTGTCTCAATGAAAGCAAATGAAGTTGGTGCCAAGACAGGTGATG CCTCAGGTCCAACTGCATTTACTCGTTCTGGAACTGTTCGAGAAGTTGAA GTTTCAGAAGAAGAGATAGAGGAAGCATCAGAACATGAGGAACTGCTCTC AGAGGTGGGGGCGGAATGGTCTGCACTGGAAGGGGTTTCCCGGCTGAACA CATTATTGACACTGCCAAGGTTTGTGCCTGACAAGGACGAGAATTAAACT GTCTGGAATCGAACTCAAAGAAGCAACAGAGGGTGAGATTTCCAAGTTTG GATTTATTTCTTTCGGTTATTTTTCAATTTTTATTTAGTTCCATCCATTT TAAGGTCTCACATATCTATCTACTGGGAGGGAAAAAAAATAGGGGCAT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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