SGN Marker TG616
SGN-M329
Synonyms |
Locus associations |
RFLP details |
Insert size
1400
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image
TG616 image not available
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Forward sequence
GAGACACGCTTGCATGCCTGCAGATATAATAAGCAGCACATAACTATACTTGTTTCCTTTTTCCTTACTCCTTGTGTTTGAAAGATGAAA
GCAATAACTAATCAAACAACAAAAGTACAGATATGTACCCTTTTTTAATAGAAATTTCAAAATCCAATGTTCTGATGGTCTAATTGACTG AGAGCAACCAAGCAATATTTTCTACTGCTTCCAATAACAACATACAGATTTAAATAATACTAAAAGAAATTACCTTATGTAGAAGATTAC TTCACTGGTTTAGCAGAATCTCCCCACAATTCCTTTCTGATCAGCTTAAGAATTTCAATAATCTGTATTGAATGAAAGGGATATGTAAAC AACATACAATGTATACCTCTTACAAAATAGGCTTCAGGGGGAACTGCGATTCGTCAAACTATTTACATCCCTAAACCCCCAATTCCTCCA CCCATCCCCTGAAATTTGTTCACTAGCGGCGGGAGAAAGTCTTTTATCCTATTTGTCACTTAAATGCAACTACTAATAGTCACC |
Reverse sequence
CTCCTATAGGGAGACACCTTGCATGCCTGCAGATATAATAAGCAGCACATAACTATACTTGTTTCCTTTTTCCTTACTCCTTGTGTTTGA
AAGATGAAAGCAATAACTAATCAGACAACAAAAGTACAGATATGTACCCTTTTTTAATAGAAATTTCAAAATCCAGTGTTCTGATGGTCT AATTGACTGAGAGCAACCAAGCAATATTTTCTACTGCTTCCAATAACAACATACAGATTTAAATAATACTAAAAGAAATTACCTTATGTA GAAGATTACTTCACTGGTTTAGCAGAATCTCCCCACAATTCCTTTCTGATCAGCTTAAGAATTTCAATAATCTGTATTGAATGAAAGGGA TATGTAAACAACATACAATGTATACCTCTTACAAAATAGGCTTCAGGGGGAACTGCAATTCGTCAAACTATTTACATCCCTAAACCCCCA ATTCCTCCACCCATCCCCTGAAATTTGTTCACTAGCGGCGGGAGAAAGTCTTTTATCCTATTTGTCACTTAAATGCAGCTACTAATAGTC ACCA |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U163023 | 3.6e-39 | 81 (15.2% of RFLP seq) | + |
SGN-U163022 | 3.6e-39 | 81 (15.2% of RFLP seq) | + |
SGN-U152573 | 2.3e-40 | 83 (15.5% of RFLP seq) | + |
SGN-U163023 | 3.7e-39 | 81 (14.9% of RFLP seq) | - |
SGN-U163022 | 3.7e-39 | 81 (14.9% of RFLP seq) | - |
SGN-U152573 | 2.4e-40 | 83 (15.3% of RFLP seq) | - |
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| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
TG616 was used as an overgo probe on plate 16 [well A7]
Plausible BAC Matches: None
Overgo Sequences
A sequence
TCCAATGTTCTGATGGTCTAATTG
|
B sequence
CTTGGTTGCTCTCAGTCAATTAGA
|
AB sequence
TCCAATGTTCTGATGGTCTAATTGACTGAG
|
Marker sequence
GAGACACGCTTGCATGCCTGCAGATATAATAAGCAGCACATAACTATACT
TGTTTCCTTTTTCCTTACTCCTTGTGTTTGAAAGATGAAAGCAATAACTA ATCAAACAACAAAAGTACAGATATGTACCCTTTTTTAATAGAAATTTCAA AATCCAATGTTCTGATGGTCTAATTGACTGAGAGCAACCAAGCAATATTT TCTACTGCTTCCAATAACAACATACAGATTTAAATAATACTAAAAGAAAT TACCTTATGTAGAAGATTACTTCACTGGTTTAGCAGAATCTCCCCACAAT TCCTTTCTGATCAGCTTAAGAATTTCAATAATCTGTATTGAATGAAAGGG ATATGTAAACAACATACAATGTATACCTCTTACAAAATAGGCTTCAGGGG GAACTGCGATTCGTCAAACTATTTACATCCCTAAACCCCCAATTCCTCCA CCCATCCCCTGAAATTTGTTCACTAGCGGCGGGAGAAAGTCTTTTATCCT ATTTGTCACTTAAATGCAACTACTAATAGTCACC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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