SGN Marker TG115

SGN-M346

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
2500
Vector
pUC
Cutting Site
PST1
Drug Resistance
AMP
Image
TG115 RFLP image
Forward sequence
CCTAAATCAATATTGAAGAGGGCGACTAGCTGTTATACGAAAAGCAAAAAAGGTTTCATGACTTGACCACTATTTCTCACTAATTCTATC
TTCATTTACATTACAGACAAACCTAGATAGATAAGGCAGTTTCACAGATATTGTCCCAAGTGCTACCATCATCACACTTCATGCAACTAT
CCGTACACTACAACATGATGTGGCCTCCGAACATTTCAAGACATAAGCAGAAATCTGGTGCGCATCCCCAACCTCAGTTTCCGACATTCA
CTTTCTAACATCTGACAAAAAGCCATAACACATATCAAACACTAGACCAATTGAATGTTTCATATATGATACATCTCCAGAGACCAGTTT
TCAGAACTAGGACATATTGCCTTAGCCTGGGGGAGATTGACATTGGTTAGTTATAAGAAAGAGAAAAAAGGATGAGAAACTTCAATCAGA
TGCTCAATAGATTTATATAGGGGAGGAGACATCAACCAAAAATTACTAGTAT
Reverse sequence
GCTCGACATTCACATACTGCTTAAAGCTGCAAATAGTAAACTACGCCTAGATACTGGTATAATACTGACTATTCAAACAGGTCATTAGTT
GCATTACCTCTATGTTCTTGTACTTTACTTGATTACAATAACAAGTTGAGAATGTAATTAAGCAGTCTTTGTTTCTCTGGATATCTTTTG
AAGCAAGCTATTAGGTTACTGCAAAAATAAATCAACCATAAGAAGTTAATATGAAAAGATACAAAAACTTTATGATCCTTAATGTCTAAA
TTATGACTTCTGTGAGGTGGTGAGTCTTTTTCCTGGGAGCATCCGGAAAGATGTTTATTATATCCCCTATTCCTTAACATTTTAGTTTGA
ATCTCTTACAGTGAAAATGAGTGAGGTTTCTCGAGTTCCTATAGAAGAAAGCAACCGCTTATGCAATGATAATCCTGGTATGTTCTTAGT
TATGTTTTTGTTCTTCTCTTTTCCCCACAAATTACTCCTTGGATATTACTAAATTGCGAATATTAGGCTACT
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1647141e-146261 (52.0% of RFLP seq)+
Mapped locations  
Map: Potato meta-QTL consensus map   
Map version
107 (location: 53159)
Chromosome
6
Position
77.28 cM
Confidence
uncalculated
Protocol
unknown

MQTL_1_Late_blight_6 MQTL_1_Maturity_6 MQTL_2_Late_blight_6 MQTL_2_Maturity_6
Potato meta-QTL consensus map

Map: Tomato - Kazusa and SolCAP markers mapped to genome   
Map version
105 (location: 50342)
Chromosome
6
Position
45.64 MB
Confidence
uncalculated
Protocol
unknown


Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map   
Map version
103 (location: 48277)
Chromosome
6
Position
108.54 cM
Confidence
uncalculated
Protocol
unknown


Kazusa F2-2000 genetic map

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39896)
Chromosome
6
Position
97.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Tomato-EXPEN 2000

Map: Tomato-EXPEN 1992   
Map version
28 (location: 8939)
Chromosome
6
Position
80.00 cM
Confidence
I
Protocol
RFLP


Tomato-EXPEN 1992

Map: Potato-TXB 1992   
Map version
27 (location: 8941)
Chromosome
6
Position
54.40 cM
Confidence
I(LOD2)
Protocol
RFLP


Potato-TXB 1992
Overgo hybridization and physical mapping 
TG115 was used as an overgo probe on plate 3 [well E10]

Plausible BAC Matches:   P003N09,   P335A05,   P021K07,   P258L09,   P141B09,   P018H01,   P217M17,   P102A22,   P110H23

 Overgo Sequences

A sequence
TCCCAAGTGCTACCATCATCACAC
B sequence
CGGATAGTTGCATGAAGTGTGATG
AB sequence
TCCCAAGTGCTACCATCATCACACTTCATG
Marker sequence
CCTAAATCAATATTGAAGAGGGCGACTAGCTGTTATACGAAAAGCAAAAA
AGGTTTCATGACTTGACCACTATTTCTCACTAATTCTATCTTCATTTACA
TTACAGACAAACCTAGATAGATAAGGCAGTTTCACAGATATTGTCCCAAG
TGCTACCATCATCACACTTCATGCAACTATCCGTACACTACAACATGATG
TGGCCTCCGAACATTTCAAGACATAAGCAGAAATCTGGTGCGCATCCCCA
ACCTCAGTTTCCGACATTCACTTTCTAACATCTGACAAAAAGCCATAACA
CATATCAAACACTAGACCAATTGAATGTTTCATATATGATACATCTCCAG
AGACCAGTTTTCAGAACTAGGACATATTGCCTTAGCCTGGGGGAGATTGA
CATTGGTTAGTTATAAGAAAGAGAAAAAAGGATGAGAAACTTCAATCAGA
TGCTCAATAGATTTATATAGGGGAGGAGACATCAACCAAAAATTACTAGT
AT
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of TG115  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D346 marker 346
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