SGN Marker TG636

SGN-M376

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
2000
Vector
pGEM4Z
Cutting Site
PST1
Drug Resistance
AMP
Image
TG636 RFLP image
Forward sequence
GGGAGAAAGCTTGCATGCCTGCAGTTGAGGCAAACCTCCTCCTACTGAAGAAACTGTTCCTGTGAAAGGTAAAAGCACAACTAAGAAGGA
CAGTCTTGCAAAGACCGGAAAAGATGCAAGGTCTAAAGTCTCCCCAGGATCTCTGTCAAGGAGCAGGATTGATGCTTTAGCAAAGAGCAA
GAAGATGTCTCCTCCTACTAACAAACTGACAACCCAGAAGAGCAAATTAGATCGGGTACGACAATAACCAGTAACCTCATTTTCCCGTTG
TTTTTGCCTCCATTATTTTTGTCTTTCTTATAAATCATACTTCCTCATTGTTTAAATAGGACGAAGAAATGCGCAAGAGAATGGAAGAAT
TAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTA
AAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGG
Reverse sequence
GGAGACAGCTTGCATGCCTGCAGTTGAGGCAAAACCTCCTCCTACTGAAGAAACTGTTCCTGTGAAAGGTAAAAGCACAACTAAGAAGGA
CAGTCTTGCAAAGACCGGAAAAGATGCAAGGTCTAAAGTCTCCCCAGGATCTCTGTCAAGGAGCAGGATTGATGCTTTAGCAAAGAGCAA
GAAGATGTCTCCTCCTACTAACAAACTGACAACCCAGAAGAGCAAATTAGATCGGGTACGACAATAACCAGTAACCTCATTTTCCCGTTG
TTTTTGCCTCCATTATTTTTGTCTTTCTTATAAATCATACTTCCTCATTGTTTAAATAGGACGAAGAAATGCGCAAGAGAATGGAAGAAT
TAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGCAGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTA
AAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTGCAGGTCAAGCATTAAGGAGCAATCCATCAAGGAAAA
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1676293e-101185 (34.8% of RFLP seq)+
SGN-U1676291e-103189 (35.3% of RFLP seq)-
Mapped locations  
Map: Tomato QTL map   
Map version
137 (location: 53907)
Chromosome
2
Position
41.40 cM
Confidence
uncalculated
Protocol
RFLP

Dry_matter_weight_dmw2_1 Titratable_acidity_ta2_1 Eugenol_content_eug2_1 Fruit_weight_fw2_1Soluble_solid_content_ssc2_1 Sugar_content_suc2_1 3_Methylthio_propanal_content_mta2_1 Hex_3_en_1_ol_content__x3o2_1 Fruit_diameter_fd2_1 Color_a_a2_1 Dry_matter_weight_dmw2_2 Sugar_content_suc2_2 Soluble_solid_content_ssc2_2 Color_L_L2_1 Fruit_weight_fw2_2Titratable_acidity_ta2_2 Dry_matter_weight_dmw2_3 Color_b_b2_1Fruit_diameter_fd2_2 Elasticity_ela2_1 Carotene_content_car2_1 2_Isobutylthiazole_content_ibt2_1
Tomato QTL map

Map: Tomato-EXPEN 1992   
Map version
28 (location: 9009)
Chromosome
2
Position
55.60 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992
Overgo hybridization and physical mapping 
TG636 was used as an overgo probe on plate 15 [well F12]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
AGAAAGCTTGCATGCCTGCAGTTG
B sequence
AGGAGGAGGTTTGCCTCAACTGCA
AB sequence
AGAAAGCTTGCATGCCTGCAGTTGAGGCAA
Marker sequence
GGGAGAAAGCTTGCATGCCTGCAGTTGAGGCAAACCTCCTCCTACTGAAG
AAACTGTTCCTGTGAAAGGTAAAAGCACAACTAAGAAGGACAGTCTTGCA
AAGACCGGAAAAGATGCAAGGTCTAAAGTCTCCCCAGGATCTCTGTCAAG
GAGCAGGATTGATGCTTTAGCAAAGAGCAAGAAGATGTCTCCTCCTACTA
ACAAACTGACAACCCAGAAGAGCAAATTAGATCGGGTACGACAATAACCA
GTAACCTCATTTTCCCGTTGTTTTTGCCTCCATTATTTTTGTCTTTCTTA
TAAATCATACTTCCTCATTGTTTAAATAGGACGAAGAAATGCGCAAGAGA
ATGGAAGAATTAGTGATCGAGAGGCAAAAGAGGATTGCAGAAAGAAGTGC
AGCTAAGGGTTCGTCCCCAGCAGCTTCCAAGAAAGGGCCAGCAGGAAGTA
AAACAGCTTCAAAGATCTCACCTTCATCCAAACTTCACACATTTCCAGTG
CAGGTCAAGCATTAAGGAGCAATCCATCAAGG
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of TG636  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D376 marker 376
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