Sol Genomics Network

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SGN Marker Asc1

SGN-M3877
KFG markers are Known Function Genes

Synonyms

None

Locus associations

This marker is associated with the Alternaria stem canker resistance locus.

Mapped locations

Map: Tomato-LXCHM 2007
Map version 68 (location: 42939)
Chromosome 3
Position 31.80 cM
Confidence uncalculated
Protocol CAPS

Tomato-LXCHM 2007

PCR data Exp. ID 43939

Forward primer (5'-3')

ATCACATCGCTGCTTCGGTTG

Accessions and product sizes

Approximate temperature

58°C

Reverse primer (5'-3')

ATCCCAGTAGTCCGTTCCTTCT

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38040)
Chromosome 3
Position 105.50 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

Other PCR data

PCR data Exp. ID 35561
Forward primer (5'-3') TTCTCTCTTTTCGCGTTGGT	Digested band sizes (using ApoI) Solanum lycopersicum LA925: 900 Solanum pennellii LA716: 1100	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGGCAAGAGGCTTTGCTAAT	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1100 Solanum lycopersicum LA925: 1100	Approximate temperature 60°C

Overgo hybridization and physical mapping

Asc1 was used as an overgo probe on plate 13 [well C6]

Plausible BAC Matches: P018H24, P036B17

Overgo Sequences

A sequence

CTGCTTCGGTTGATTGGGAGAAAG

B sequence

TACTCAGGGAGAGACTCTTTCTCC

AB sequence

CTGCTTCGGTTGATTGGGAGAAAGAGTCTC

Marker sequence

GGGCCCTGCTCTGATACCATGTGAAATTAGGTCTTAGGCCTAACTCACAC
CCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCTAAGCCTTGTAAAGAGT
CAACTTATCTCATTAATCACCGATGTGGAATTTTTATCATTCTTTAACAA
AAGTTAGAAATATATTTATATAAAATCGAAACGATCAAACGTGTTAGAGA
ATAATATGTATTATTGTGTCTTAGCTTAGAAAGAAATGTTTGACAGATGT
TAAATGTTTGACTTAATTTTTTTTATTCAAAGCAGTCGATCCGCCAAATA
TGATTTTTCTAAAAAAAGAATTATTCAATCGAAACTTCCGGGACATATCT
CCAAACAGAATCATGGCTTTTGCTACAAAATCATCACCTCGCTCTTTACA
ACCTAACAATTCGAAAACTTGTTCTGCAATTCATTTGAAACTACAACAAT
AGAAGAAGAAAAAAAAGTTCAATTCAACAGATTTTTGAAAAAAAAAGTCA
ACAGATGAAAAACCTGGATCACATCGCTGCTTCGGTTGATTGGGAGAAAG
AGTCTCTCCCTGAGTACCAGGATTTGATATTTCTCTTATTTTTTGCTCTC
TTCTTCCCCGTTCTTCGATTCATACTCGACAGATTTGTTTTCGAGGTAGT
AGCTCGGTTGGTTGGCTATCTCAACTAATTTTGATTAGTTTTTTTCCCAG
TTTTCTTCCCTCCTCTGTTTTTTTTTTCTTTTCTGTTTGAAATTTGAGAT
TGATTTGGACGCGTGCTTATATTGTTTACTCTGATGCTAGGCATTGGCTA
AGCGTATGATTTTTGGAAAGAAGACGGTTGTAAATATTAACGGTCGTGAA
GAGAGGAAGAAGATCAACAAATTCAAAGAGTCAGCATGGAAATTTGTATA
TTTTCTATCTGCTGAGCTACTTGCACTTTCTGTGACTTGTAATGAGCCTT
GGTTCACAGATAGTCGGTATTTCTGGGCAGGACCTGGAGATGTGGTTTGG
CCTAATTTGAAAATGAAGTAAAGCTCTTCTCATTTTTGAAGATTTTGTAT
TGATATCTGAATCAGAAAAGGAGTGTTTATAACCTGGTTGATTCGAATTT
GGCAGATTAAAGCTAAAATTATTGTACATGTATGCTGGAGGATTCTACTT
TTACTCCATATTCGCAACACTTTATTGGGAAACAAGACGCTATGATTTTG
CTGCGCAGATAATTCATCATGTAACAACAGTGTCACTCATTGTGTTGTCT
TACGTATACGGGTACAGCCATTTGCTCAGCTGTTATAAAAGTGTTGGTGT
GAGTTTAGTTTTGAAGAATGTGAACATTCTGTTTTGCAGGTTTGCGCGTA
TTGGATCAGTGGTTCTAGCACTTCATGACGGAAGTGATGTATTCATGGAA
ATTGCAAAGATGTCGAAATACAGTGGCTTTGATTTGATTGCTGATATTTT
CTTCTCTCTTTTCGCGTTGGTTTTTACATCACTTCGTATAATCTGCTATC
CCTTCTGGATAATCCGAAGCACATGGTGAGTTCACTACCAACTGCATTTA
CAGTAAGCTTGTTTTCTGTTAGTTCATCGTCTCTAAGATTCGTTATTTCT
TTCAACTTTGTGCAGCTACGAACTTCTTTATGTATTGGATATACAGAAGG
AACGGACTACTGGGATCATACTTTACTTTGTTTTCAATGCATTGCTGATA
TGCTTGCTGGTTCTTCACCTCTTTTGGTTCAAAATCATACTGCGGATGGT
CAAGAACCAAATCCTATCAAGAGGCCACATTACTGATGATGTTCGAGAAG
GTAAAAGAATCATCTGCTTCATTGATCATATAAACTTCCAGCATGATAGC
TTTTGATCTTACACTGCATTTTTGTTTATGATCTGCAGATTCTGAATCTG
ATGATGACCACAAAGACTGATCCTTCAGTAGCTAAGACCAAAAGTACAAT
TCATGGTCCAGGCTGATGTTTGAAGCATTTAAATATTTTGTATTTCTTGT
AGAGGCAGCACTACTTGATGTCGATGAACAAATTGAACATAGGGAATTAT
AGTGAAAATCTTTATTCTGGGTTCCATTCATGAGTTTTGCCTGTATGTAT
AAGAAAAAAGTTGCACTGTTGGAATTATGTATATCCTGATATGCTATTTG
GATGAACTGTCAATTTAATTCGTTTAAATTTCTTCATCTCTGAAGTCTAA
ACAGCTAAATTGACAGAATATTTCGCCATTGACCAACTATAAACAATAAT
TTTGAAGAAAGAACATATGATTAGCAAAGCCTCTTGCCACAAATATAACC
TAAACAAGAGCAAAATATTGCTGCTTCTCTCACATTTCAACAGGGAAAAG
TCAAGAATGAATAGTAACTTTGCAGTAAATTATGTAACAAAAGCTAAGTG
ATGCTATAAGATGATTCATCTGTAAACTAACCCCACAAATCTTGTCCTAT
CTTTTCA

Genomic location of Asc1

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D3877 marker 3877