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SGN Marker U214603

SGN-M3878

SynonymsNone
Locus associationsNone
Derivations 
This marker was derived from SGN unigene SGN-U214603
Mapped locations  
Map: Tobacco N. tomentosiformis   
Map version
91 (location: 46792)
Chromosome
3
Position
52.20 cM
Confidence
I(LOD2)
Protocol
CAPS


Tobacco N. tomentosiformis

Map: Tomato-EXPEN 2000   
Map version
52 (location: 40202)
Chromosome
3
Position
106.00 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000
Other PCR data 
PCR data   Exp. ID 14040
Forward primer (5'-3')
ATTTCCCGAAAAATATCAAACCC
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
TCGCGCTCTTGACTGTTGAAAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 320
Solanum pennellii LA716: 350
 Approximate temperature
55°C
  
PCR data   Exp. ID 14040
Forward primer (5'-3')
ATTTCCCGAAAAATATCAAACCC
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
TCGCGCTCTTGACTGTTGAAAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 320
Solanum pennellii LA716: 350
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U214603
SGN-U272654
Overgo hybridization and physical mapping 
U214603 was used as an overgo probe on plate 12 [well H12]

Plausible BAC Matches:   P066J22,   P007M18,   P286D15

 Non-Plausible BAC matches

 Overgo Sequences

A sequence
CCTGATGCAAGGTAGAACCGTTCT
B sequence
CCTGTGAGCTATGACAAGAACGGT
AB sequence
CCTGATGCAAGGTAGAACCGTTCTTGTCAT
Marker sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGAACTGGATGATGTCTGGTTTGCCTATCCATCCCGTCCTA
GCCACATGGTCCTCAAGGNNNNNGTATAACAATGAAGCTACAATCTGGTT
CAAAGGTTGCACTGGTTGGTCCAAGTGGTGGTGGAAAGNNNNNACTACAA
TAGCAAATTTGATAGAGAGATTCTATGATCCTGTTAAAGGGAAGATCTTG
CTCAATGGGGTTTCTGTGGTTGAAATATCTCATAAGCACCTACACCATAA
GNNNNNGTTAGTATAGTGAGCCAGGAACCTGTTCTTTTCAACTGTTCCAT
TGAAGAAAATATTGCCTATGGATTGGGCGGCAAAGCAAGCAGTGAAGATA
TAGAAAAAGCAGCTNNNNNANNNNNAAATGGCCAATGCTCATGAATTTGT
ATCCAAATTTCCCGAAAAATATCAAACCCATGTCGGAGAACGAGGATTAA
GACTTTCTGGTGGTCAGAAACAGAGAATAGCCATAGCTAGAGCACTACTG
ATGAACCCTACAATTTTATTGTTGGACGAGGCCACGAGTGCTCTGGATGC
TGAAAGTGAATATCTAGTTCAGGNNNNNATGCCATGGATTCCCTGATGCA
AGGTAGAACCGTTCTTGTCATAGCTCACAGGCTTTCAACAGTCAAGAGCG
CGAACACTGTAGCTGTTATTTCGGATGGTCAAATAGTGGAAAGTGGCACA
CATGATGACCTTCTGAACAAGAATGGGATCTATACAGCACTTGTGAGGAG
GCAGTTGCAGGGATACAAATCTGATAGCTAA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of U214603  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D3878 marker 3878
User comments 
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