SGN Marker TG218
SGN-M40
Synonyms |
Locus associations |
RFLP details |
Insert size
2600
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image
TG218 image not available
|
Forward sequence
AGTCGACCTGCAGGGACTATTGATTTCATATTCGGTAATGCAGCAGTTGTATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAA
TACCAGCAAAACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACATCAATTCAGTTTTGTGATATAATAGCAAGT CCTGACCTAAAACCAGTCGTGAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAACTGTAGTGATGGAATCATAC TTGGGTGGTCTCATTGATCCATCGGGTTGGGCTGAGTGGCACGGAGATTTTGCGTTAAAGACATTGTATTATGGTGAATTTATGAATAAT GGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTGGCTATCATGTCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCT AAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGACGTGGCGTATGTGGATGGATTATATGATTAGAGTGATATAAAATTACTCTTT GTTTATGTAACAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATGAAGTGCCACATGAGCAGGGCAGAGCCGGGA T |
Reverse sequence
CATATTATGAAAATGCACTAGTATATGTTACACTTGCTCATGATAGCGGAACCAGGATTTTCATTAAGGGTGTTTGAAATATCAAAAGTA
TACATAACAAAGACGCTAAAGGGTTCAACATCTACTATATATACATAAGTTGTTGAAACCTTACCAAGAGTGGCAGAGCGGAAGGTTGTT GATCCATCGACAACATTAAGGCTACCAGTAATGATGGTAGCATTCATGCCATCACCAACAATCATTAAGTTCATTTTTTTCTTAGTCACC ACAACATTCTCTTTATAAATTCCCATCTTTACATAAATTACATAACGCGTCTTATTCTTATCTGGTGCAGCATCAACAGCTTCAGCAAGT GTTTGATAATCCCCCGTTCCATCTTGTGCCACCACTGCATTCGCTATAATGTCCTTACCCGAACTCTCCATCAGCTTCCTATCCCTCGAA CTCACCCAATATGGCATTTTTCCTAAACCCTGCCTCAAAACTTCATCATTTGGAGTTGTCACGGATGCAAGCATCGCCAATGCTACCTTA GCTCTCGTGATCAACTCATCAAGAACCGTTCCATTCTTAGTACTTAACGAAGTAA |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U143700 | 2.9e-06 | 30 (4.8% of RFLP seq) | + |
SGN-U143853 | 1.2e-08 | 126 (20.0% of RFLP seq) | + |
SGN-U143852 | 1.2e-08 | 126 (20.0% of RFLP seq) | + |
SGN-U143701 | 9e-167 | 303 (48.0% of RFLP seq) | + |
SGN-U143700 | 512 (81.1% of RFLP seq) | + | |
SGN-U147116 | 4.2e-05 | 28 (4.7% of RFLP seq) | - |
SGN-U160709 | 5.5e-26 | 139 (23.4% of RFLP seq) | - |
SGN-U143700 | 6e-146 | 421 (70.8% of RFLP seq) | - |
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| ![]() Potato meta-QTL consensus map |
| ![]() Tomato-EXPEN 1992 |
| ![]() Potato-TXB 1992 |
Overgo hybridization and physical mapping |
TG218 was used as an overgo probe on plate 8 [well G10]
Plausible BAC Matches: None
Non-Plausible BAC matches
Overgo Sequences
A sequence
TAATGGACCTGGTGCTGGTACTAG
|
B sequence
CCACTTGACACGCTTACTAGTACC
|
AB sequence
TAATGGACCTGGTGCTGGTACTAGTAAGCG
|
Marker sequence
AGTCGACCTGCAGGGACTATTGATTTCATATTCGGTAATGCAGCAGTTGT
ATTCCAGAAATGCCAGCTCGTAGCTAGAAAACCGGGTAAATACCAGCAAA ACATGGTGACTGCACAAGGCAGGACGGACCCAAATCAGGCCACGGGGACA TCAATTCAGTTTTGTGATATAATAGCAAGTCCTGACCTAAAACCAGTCGT GAAAGAATTCCCAACATATCTTGGTAGGCCATGGAAAAAATATTCAAGAA CTGTAGTGATGGAATCATACTTGGGTGGTCTCATTGATCCATCGGGTTGG GCTGAGTGGCACGGAGATTTTGCGTTAAAGACATTGTATTATGGTGAATT TATGAATAATGGACCTGGTGCTGGTACTAGTAAGCGTGTCAAGTGGCCTG GCTATCATGTCATTACTGACCCCGCTGAAGCTATGTCATTCACTGTGGCT AAGCTGATTCAGGGCGGATCATGGTTGAGGTCTACTGACGTGGCGTATGT GGATGGATTATATGATTAGAGTGATATAAAATTACTCTTTGTTTATGTAA CAAGACATCTTTAAAAAGTTCAAAGTAAGTAGTAGTAATATATCCATATG AAGTGCCACATGAGCAGGGCAGAGCCGGGAT |
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