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SGN Marker CT50

SGN-M410

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
1600
Vector
pBLUESC
Cutting Site
EcoR1
Drug Resistance
AMP
Image
CT50 image not available
Forward sequence
CTTTTTTTTTTTTTTTATATATTGTGGTATAGATTATTATATAATAACAAGGTGAATTAACATGAGAAATGAATAATTGTCACATTCTTG
TTCTGTCCATTTTCCAGTAGCGGCTAGTTGGAAAATTTGTTGTAACATGTAACACAGGCTGTCCACATTCTACTCCAGAGAGAAAGTTGG
TAAGTAGTGGGGGCAAAAGATAGAGACCCCAATAGCTATCAATTCACTTTGTTGACAATCAAGATTTGAGAAAAAAGATCAAAACTTTAC
CAACTTAGATAGCTCCATAATCAACTGTAGGTACAATTCTTTAGTGAAATTGCGGCGTTCATCTTCTGGGGACGAAGAGTAAGTAGACAA
TCAATTGTCTTGTAGAACTTGGGCTTTACCATTTTCCCTAGGACATAAGCTCTTGATCGAAGCTTGAAGTTTAATTTTAGTGGCACTGGT
AATG
Reverse sequence
TTTTTTTTTTTTTTTAGCCAAAATGCATACAAAAACTGATTCAGAAGATACGAGCTTGGCTCCTTCGTCGCCGGACAATAGAGGGCCGAC
GGCGTATTACGTTCAGAGTCCGTCACGTGATTCTCACGATGGCGAGAAGACAACGACGTCGTTTCACTCTACTCCTGTTATCAGTCCCAT
GGGTTCTCCTCCTCACTCTCACTCATCCGTCGGCCGTCACTCCCGTGATTCCTCTTCCTCCAGATTCTCCGGCTCCCTCAAGCCTGGATC
TCAGAAGATTTTACCCGACGCCGCCGGAGGCGTCGGCGGCCGTCACCACCGCAAAGGGCAGAAGCCCTGGAAGGAATGTGATGTTATTTG
AGGAAGAAGGACTACTTGAAGATGATAGATCCAGTAAATCTCTTCCACGTCGTTGCTATGTCCTTGCTTTTTGTTGTTGGTTTCTTCGTC
CTTTTCTCCTTCTTTGCTCTCATCCTTTGGGGTGCTAGTCGACCTC
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1616288e-120216 (47.6% of RFLP seq)+
SGN-U145767438 (96.5% of RFLP seq)+
SGN-U1616283.5e-4294 (19.0% of RFLP seq)-
SGN-U1616275e-146272 (54.8% of RFLP seq)-
SGN-U145767480 (96.8% of RFLP seq)-
Mapped locations  
Map: Tomato-EXPIMP 2009   
Map version
126 (location: 53472)
Chromosome
4
Position
86.67 cM
Confidence
uncalculated
Protocol
RFLP


Tomato-EXPIMP 2009

Map: Potato meta-QTL consensus map   
Map version
107 (location: 51898)
Chromosome
4
Position
61.30 cM
Confidence
uncalculated
Protocol
unknown

MQTL_1_Maturity_4 MQTL_1_Late_blight_5.2 MQTL_2_Late_blight_4
Potato meta-QTL consensus map

Map: Tomato - Kazusa and SolCAP markers mapped to genome   
Map version
105 (location: 49342)
Chromosome
4
Position
61.01 MB
Confidence
uncalculated
Protocol
unknown


Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map   
Map version
103 (location: 47279)
Chromosome
4
Position
89.22 cM
Confidence
uncalculated
Protocol
unknown


Kazusa F2-2000 genetic map

Map: Sun1642 x LA1589   
Map version
85 (location: 43653)
Chromosome
4
Position
100.20 cM
Confidence
uncalculated
Protocol
RFLP


Sun1642 x LA1589

Map: Yellow Stuffer x LA1589   
Map version
83 (location: 43512)
Chromosome
4
Position
97.80 cM
Confidence
uncalculated
Protocol
RFLP


Yellow Stuffer x LA1589

Map: Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589   
Map version
79 (location: 43053)
Chromosome
4
Position
91.80 cM
Confidence
uncalculated
Protocol
RFLP


Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589

Map: Tomato-EXPIMP 2008   
Map version
55 (location: 40730)
Chromosome
4
Position
96.00 cM
Confidence
uncalculated
Protocol
RFLP


Tomato-EXPIMP 2008

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39053)
Chromosome
4
Position
101.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Tomato-EXPEN 2000

Map: Tomato-EXHIR 1997   
Map version
32 (location: 9098)
Chromosome
4
Position
84.70 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXHIR 1997

Map: Tomato-EXPEN 1992   
Map version
28 (location: 9099)
Chromosome
4
Position
100.50 cM
Confidence
F(LOD3)
Protocol
RFLP


Tomato-EXPEN 1992

Map: Tomato-EXPIMP 2001   
Map version
26 (location: 9103)
Chromosome
4
Position
76.00 cM
Confidence
I
Protocol
RFLP


Tomato-EXPIMP 2001
Overgo hybridization and physical mapping 
CT50 was used as an overgo probe on plate 6 [well E11]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
ATGTAACACAGGCTGTCCACATTC
B sequence
CTTTCTCTCTGGAGTAGAATGTGG
AB sequence
ATGTAACACAGGCTGTCCACATTCTACTCC
Marker sequence
CTTTTTTTTTTTTTTTATATATTGTGGTATAGATTATTATATAATAACAA
GGTGAATTAACATGAGAAATGAATAATTGTCACATTCTTGTTCTGTCCAT
TTTCCAGTAGCGGCTAGTTGGAAAATTTGTTGTAACATGTAACACAGGCT
GTCCACATTCTACTCCAGAGAGAAAGTTGGTAAGTAGTGGGGGCAAAAGA
TAGAGACCCCAATAGCTATCAATTCACTTTGTTGACAATCAAGATTTGAG
AAAAAAGATCAAAACTTTACCAACTTAGATAGCTCCATAATCAACTGTAG
GTACAATTCTTTAGTGAAATTGCGGCGTTCATCTTCTGGGGACGAAGAGT
AAGTAGACAATCAATTGTCTTGTAGAACTTGGGCTTTACCATTTTCCCTA
GGACATAAGCTCTTGATCGAAGCTTGAAGTTTAATTTTAGTGGCACTGGT
AATG
Genomic location of CT50  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D410 marker 410
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