SGN Marker CT58
SGN-M423
Synonyms |
Locus associations |
RFLP details |
Insert size
600
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image
CT58 image not available
|
Forward sequence
TTTTTTTTTTTTTTTTTTTTGATGATGATTCCAGACCAGAGAAAAAACTGAAGTCCTGTTCCAGCACTTCATTGACAGTTGACGGTAACA
CTGTGAACACGCTATCTGAAGAGCTATCGGCTTTTGAATCCCAGATGAAGTTCTTGCAGATCCCATATCTCGAGGGAAATTGGGATGCAT CGGTTGATGCCTTCCTCAATACAAGTGCAATTCAGGATGGTGGAAACGCCATGGACCTTTGGTCCTTCGATGATGTACCTTCTTTAATGG GAGGTGCCTACTAAGCTGCATACACATCTTCCCTTGCTAAGTTTTGTAAATAACGCTTCATTTGAGTGAAGTTTGCGCCTGCGTTTACGT TTATCACCAAACTAAAAGACTATATATGTGTTGTATTAATTTATTCAAAATTTACTCGTTTGATATATGTAAGCATGTATCCTTGTTTTC ATAAGTCAATGTCTTATTTTCTTAAAAAAAAAAAAAAAAAAA |
Reverse sequence
TTTTTTTTTTTTTTTTTTTTGATGATGATTCCAGACCAGAGAAAAAACTGAAGTCCTGTTCCAGCACTTCATTGACAGTTGACGGTAACA
CTGTGAACACGCTATCTGAAGAGCTATCGGCTTTTGAATCCCAGATGAAGTTCTTGCAGATCCCATATCTCGAGGGAAATTGGGATGCAT CGGTTGATGCCTTCCTCAATACAAGTGCAATTCAGGATGGTGGAAACGCCATGGACCTTTGGTCCTTCGATGATGTACCTTCTTTAATGG GAGGTGCCTACTAAGCTGCATACACATCTTCCCTTGCTAAGTTTTGTAAATAACGCTTCATTTGAGTGAAGTTTGCGCCTGCGTTTACGT TTATCACCAAACTAAAAGACTATATATGGGTTGTATTAATTTATTCAAAATTTACTCGTTTGATATATGTAAGTATGTATCCTTGTTTTC ATAAGTCAATGTCTTATTTTCTTAAAAAAAAAAAAAAAAAAA |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U153549 | 3.5e-05 | 44 (8.9% of RFLP seq) | + |
SGN-U145169 | 7e-25 | 159 (32.3% of RFLP seq) | + |
SGN-U145168 | 4.5e-26 | 173 (35.2% of RFLP seq) | + |
SGN-U144119 | 1e-158 | 281 (57.1% of RFLP seq) | + |
SGN-U144120 | 434 (88.2% of RFLP seq) | + | |
SGN-U153549 | 3.5e-05 | 44 (8.9% of RFLP seq) | - |
SGN-U145169 | 7e-25 | 159 (32.3% of RFLP seq) | - |
SGN-U145168 | 4.5e-26 | 173 (35.2% of RFLP seq) | - |
SGN-U144119 | 1e-158 | 281 (57.1% of RFLP seq) | - |
SGN-U144120 | 434 (88.2% of RFLP seq) | - |
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| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
CT58 was used as an overgo probe on plate 2 [well G9]
Plausible BAC Matches: None
Non-Plausible BAC matches
Overgo Sequences
A sequence
CGGTAACACTGTGAACACGCTATC
|
B sequence
AGCCGATAGCTCTTCAGATAGCGT
|
AB sequence
CGGTAACACTGTGAACACGCTATCTGAAGA
|
Marker sequence
TTTTTTTTTTTTTTTTTTTTGATGATGATTCCAGACCAGAGAAAAAACTG
AAGTCCTGTTCCAGCACTTCATTGACAGTTGACGGTAACACTGTGAACAC GCTATCTGAAGAGCTATCGGCTTTTGAATCCCAGATGAAGTTCTTGCAGA TCCCATATCTCGAGGGAAATTGGGATGCATCGGTTGATGCCTTCCTCAAT ACAAGTGCAATTCAGGATGGTGGAAACGCCATGGACCTTTGGTCCTTCGA TGATGTACCTTCTTTAATGGGAGGTGCCTACTAAGCTGCATACACATCTT CCCTTGCTAAGTTTTGTAAATAACGCTTCATTTGAGTGAAGTTTGCGCCT GCGTTTACGTTTATCACCAAACTAAAAGACTATATATGTGTTGTATTAAT TTATTCAAAATTTACTCGTTTGATATATGTAAGCATGTATCCTTGTTTTC ATAAGTCAATGTCTTATTTTCTTAAAAAAAAAAAAAAAAAAA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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