SGN Marker CT116
SGN-M426
| Synonyms |
| Locus associations |
| RFLP details |
|
Insert size
1400
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image
CT116 image not available
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Forward sequence
AGAGGTGTCATTTGGCGCATTCATGTCCATGTAAAATTATTTTACGAAACAAAAAAAGGAATTCGAAGCTAGAGGTGTCAGAAAAGTTAC
CACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGC AGAATTCCTTTTTTTTTTTTTTTTAAAAGGGAACAAGGTTGATCTGTTAATACAAAAGAAAATGATTGTCATCCATCACTTGATCTAAAG TCCACTGGACAAAAACATCTAAAATCTGGAGGAACAAAGCTTAAAACAGAGCAGACATAAAGAGTAACTCCATTTGCGAGATTGTCACAA GGCAGATTCAGGTTCCAATTGCAACTAGCTACAAGTGCTGGGTAGTGGATGACCAAAGAGAATTGGGAGGGTAGATTGCTTAGCTTCCAG CTGTAGTTGGCACTGCACGAGGCTTCGAATCTTCAGCCTTTTCGTGTTCCTTGTTAA |
|
Reverse sequence
TTTTTTTTTTTTTCTCCAGATTTCGAAGAGAGGAAGAAGCAATAATGGATGTAATCAAATCTCAGCAAATATCTTCGAGGCCGATTGAGA
AGGTAATTGTTCACCCGCTTGTGCTTTTGAGCATCGTAGACCACTACAATAGAGTTGCAAGAGACACAAGGAAACGTGTTGTTGGGGTTT TGCTTGGAACTTCGTTTAAAGGCACTGTTGATGTTACTAATAGCTATGCAGTGCCCTTTGAGGAGGAGGAGAGGGACCCTAGTATCTGGT TTCTTGACCATAACTATCATGAATCGATGTTTTCCATGTTCCGTAGGATAAACGCAAAGGAGCATGTTGTTGGTTGGTATAGCACTGGTC CCAAACTTCGGGAAAATGACCTCAACATTCATGGGCTTTTAATGACTACGTCCCTACTCCAGTCTTGGTTATAATTGATGTCCAGCCTAA GGAGCTAGGAATACCAACTAAGGCGTACTATGCAGTTGAGGAAGTTAAAGAGAATGCAACTCAGAAAAGCCAGA |
| RFLP sequence matches to unigenes |
| Unigene | e value | Match length (bp) | Strand |
|---|---|---|---|
| SGN-U146178 | 1.1e-20 | 50 (9.9% of RFLP seq) | + |
| SGN-U161309 | 3.2e-70 | 181 (35.7% of RFLP seq) | + |
| SGN-U144940 | 1e-171 | 303 (59.8% of RFLP seq) | + |
| SGN-U169573 | 3.7e-42 | 171 (32.6% of RFLP seq) | - |
| SGN-U144940 | 512 (97.7% of RFLP seq) | - |
 Mapped locations
|
Mapped locations
|  Tomato-EXPEN 1992 |
| Overgo hybridization and physical mapping |
CT116 was used as an overgo probe on plate 3 [well G1]
Plausible BAC Matches: None
Non-Plausible BAC matches
P077J19,
P174C19,
P014L06,
P288C05,
P016M24,
P174B02,
P134G24,
P158K23,
P160K24,
P250N12,
P140L10,
P048D19,
P226H16,
P096D12,
P174A02,
P204N05,
P319N16,
P027A13,
P114M14,
P310O16,
P142A15,
P220E21,
P002G03,
P204O14,
P109L03,
P011L02,
P288D05,
P118G07,
P294B12,
P042G05,
P326C11,
P018I11,
P112E07,
P323A18,
P145O15,
P216C19,
P330M20,
P182D04,
P327H24,
P332K11,
P030M19,
P100J15,
P021A08,
P030C02,
P175L14,
P258G14,
P169I23,
P331H22,
P246H06,
P025N04,
P036P08,
P225N15,
P108N20,
P195N12,
P099F01,
P121H24,
P335P07,
P281B05,
P029E01,
P067D12
Overgo Sequences
|
A sequence
GCGACGTTGCTTTTTGATCCTTCG
|
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B sequence
TAGGAAGAGCCGACATCGAAGGAT
|
|
AB sequence
GCGACGTTGCTTTTTGATCCTTCGATGTCG
|
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Marker sequence
AGAGGTGTCATTTGGCGCATTCATGTCCATGTAAAATTATTTTACGAAAC
AAAAAAAGGAATTCGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATA ACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTT CGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCCTTTTTTTTTTTT TTTTAAAAGGGAACAAGGTTGATCTGTTAATACAAAAGAAAATGATTGTC ATCCATCACTTGATCTAAAGTCCACTGGACAAAAACATCTAAAATCTGGA GGAACAAAGCTTAAAACAGAGCAGACATAAAGAGTAACTCCATTTGCGAG ATTGTCACAAGGCAGATTCAGGTTCCAATTGCAACTAGCTACAAGTGCTG GGTAGTGGATGACCAAAGAGAATTGGGAGGGTAGATTGCTTAGCTTCCAG CTGTAGTTGGCACTGCACGAGGCTTCGAATCTTCAGCCTTTTCGTGTTCC TTGTTAA |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of CT116
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| User comments |
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