SGN Marker TG582
SGN-M439
Synonyms |
Locus associations |
RFLP details |
Insert size
1300
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image
TG582 image not available
|
Forward sequence
TACACACCAATATTACAACTAGTAATTTTCCCAGATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAG
TAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATT TTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTTTCCACAAAGGGACTGCTGATATTAAGTTTTCATATA TATATTGACAGGTGGCTTTCACGACCATAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAAT GGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGCTTTACTATTTCATGAATCAAAAGGGAT ACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATA |
Reverse sequence
GGAGACAGCTTGCATGCCTGCAGCAGATGCCTTCTTTGCAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGG
GAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGAACATTTTTCTTAC AAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATAT ACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGCC ACTGTTACTTTTTTTTTTTTTTTTGGTGGAGAGTAGGTTTTCTTTTGAGGTGGAAGAGACAAGGAGTGGAGAAGTAGTTCATTAATTTGT AGTTCAGAAATGTGATTATGACGAGTACTAGAATAATTTGTCCCTCAGTTTTGTATAACATGTTCTGTCCCATTTAACACATTTCGCAG |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U143716 | 3.5e-05 | 72 (14.7% of RFLP seq) | + |
SGN-U143715 | 3.5e-05 | 72 (14.7% of RFLP seq) | + |
SGN-U143861 | 3.5e-05 | 48 (9.8% of RFLP seq) | + |
SGN-U160719 | 3.5e-05 | 72 (14.7% of RFLP seq) | + |
SGN-U160718 | 8.7e-06 | 73 (14.9% of RFLP seq) | + |
SGN-U143714 | 8.7e-06 | 77 (15.7% of RFLP seq) | + |
SGN-U143862 | 8.7e-06 | 117 (23.8% of RFLP seq) | + |
SGN-U161516 | 2.2e-06 | 106 (21.6% of RFLP seq) | + |
SGN-U145521 | 2.2e-06 | 106 (21.6% of RFLP seq) | + |
SGN-U143714 | 2.2e-06 | 90 (18.3% of RFLP seq) | + |
SGN-U143655 | 3.6e-08 | 77 (15.7% of RFLP seq) | + |
SGN-U143716 | 3.7e-11 | 78 (15.9% of RFLP seq) | + |
SGN-U160719 | 3.7e-11 | 78 (15.9% of RFLP seq) | + |
SGN-U143715 | 3.7e-11 | 78 (15.9% of RFLP seq) | + |
SGN-U143654 | 9.4e-12 | 131 (26.7% of RFLP seq) | + |
SGN-U166280 | 1.2e-29 | 133 (27.1% of RFLP seq) | + |
SGN-U166280 | 8.1e-37 | 109 (22.2% of RFLP seq) | + |
SGN-U147406 | 1.5e-78 | 147 (27.3% of RFLP seq) | - |
SGN-U147406 | 353 (65.5% of RFLP seq) | - |
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| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
TG582 was used as an overgo probe on plate 16 [well G2]
Plausible BAC Matches: None
Non-Plausible BAC matches
Overgo Sequences
A sequence
GATAGCCCTTATGCTGGTGGTGTT
|
B sequence
GGATGGTGACTTGGAAAACACCAC
|
AB sequence
GATAGCCCTTATGCTGGTGGTGTTTTCCAA
|
Marker sequence
TACACACCAATATTACAACTAGTAATTTTCCCAGATTTAAAGTAGAAGAT
AGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAGTAGCTCAGGA TATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATG CTGGTGGTGTTTTCCAAGTCACCATCCATTTTCCTCCTGATTACCCTTTC AAACCTCCCAAGGTATGTTTTCAATTGATCACTTTCCACAAAGGGACTGC TGATATTAAGTTTTCATATATATATTGACAGGTGGCTTTCACGACCATAG TTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTG AAGGATCAATGGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTC TAGCTCTTCCTTTTCCTCAATGCTTTACTATTTCATGAATCAAAAGGGAT ACACATTAGTTAGTGTTTGGTTGCTGGCTAACATAAAAATA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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