SGN Marker TG583

SGN-M442

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
1800
Vector
pGEM4Z
Cutting Site
PST1
Drug Resistance
AMP
Image
Forward sequence
GGGAGACAGCTTGCATGCCTGCAGCAGATGCCTTCTTTGCAGCACCTTGCGATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGG
GGAGAAATTCGAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCTTGGTGTCACAGAAGCAGAACATTTTTCTTA
CAAAGTACAAAATTGATTCCTTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAGCAGCTGAAAAGATGCATATA
TACTGACCACACCCCTACGCAGTAATATCCTAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCCGAGTGCCTGC
CACTGTTACTTTTTTTTTTTTTTTTGGGGGAAAGAAGGTTTCCTTTAGGGGGGGAAAAAAC
Reverse sequence
TACACACCAATATTACAACTAGTAATTTTCCCAAATTTAAAGTAGAAGATAGTTTTGAAGATTTGTTATACTAATATTTTTCAGGTCCAG
TAGCTCAGGATATGTTTCATTGGCAAGCAACTATTATTGGTCCAAATGATAGCCCTTATGCTGGTGGTGTTTTCCAAGTCACCATCCATT
TTCCTCCTGATTACCCTTTCAAACCTCCCAAGGTATGTTTTCAATTGATCACTTTCCACAAAGGGACTGCTGATATTAAGTTTTCATATA
TATATTGACAGGTGGCTTTCAGGACCAGAGTTTTTCATCCAAATATAAACAATAATGGAAATATTTGTTTGGACATACTGAAGGATCAAT
GGAGTCCTGCCCTCACCATATCCAAGGTGCTACTGCTTTCTAGCTCTTCCTTTTCCTCAATGCTTTACTATTTCATGAATCAAAAGGGAT
ACACATTACCTAGTGTTTGGTTGCTGGCTAACATAAAA
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U147406353 (83.8% of RFLP seq)+
SGN-U1438613.4e-0548 (9.8% of RFLP seq)-
SGN-U1438628.7e-06117 (24.0% of RFLP seq)-
SGN-U1437148.7e-0677 (15.8% of RFLP seq)-
SGN-U1615162.2e-06106 (21.7% of RFLP seq)-
SGN-U1455212.2e-06106 (21.7% of RFLP seq)-
SGN-U1437165.6e-0791 (18.6% of RFLP seq)-
SGN-U1437155.6e-0791 (18.6% of RFLP seq)-
SGN-U1607195.6e-0791 (18.6% of RFLP seq)-
SGN-U1607181.4e-0792 (18.9% of RFLP seq)-
SGN-U1436553.6e-0877 (15.8% of RFLP seq)-
SGN-U1437143.6e-08109 (22.3% of RFLP seq)-
SGN-U1607193.7e-1178 (16.0% of RFLP seq)-
SGN-U1437163.7e-1178 (16.0% of RFLP seq)-
SGN-U1437153.7e-1178 (16.0% of RFLP seq)-
SGN-U1436549.4e-12131 (26.8% of RFLP seq)-
SGN-U1662801.2e-29133 (27.3% of RFLP seq)-
SGN-U1662808.1e-37109 (22.3% of RFLP seq)-
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 40099)
Chromosome
2
Position
83.20 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 2000

Map: Tomato-EXPEN 1992   
Map version
28 (location: 9179)
Chromosome
2
Position
70.60 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992
Overgo hybridization and physical mapping 
TG583 was used as an overgo probe on plate 6 [well E3]

Plausible BAC Matches:   P115O23,   P048G23,   P115M23,   P023K06,   P071P16

 Non-Plausible BAC matches

 Overgo Sequences

A sequence
CTTCTTTGCAGCACCTTGCGATAC
B sequence
CCTTCTGGAACTGGATGTATCGCA
AB sequence
CTTCTTTGCAGCACCTTGCGATACATCCAG
Marker sequence
GGGAGACAGCTTGCATGCCTGCAGCAGATGCCTTCTTTGCAGCACCTTGC
GATACATCCAGTTCCAGAAGGATAAAGGTGGTGCAGTTGGGGAGAAATTC
GAGTCCATCAACTCATAATCAAATAGCATTTCTCAAAGGAATTACGTTCT
TGGTGTCACAGAAGCAGAACATTTTTCTTACAAAGTACAAAATTGATTCC
TTTTCAACTTGCTCTAGAGAAAAATGCATTTGACAACGGACTAGCAGAAG
CAGCTGAAAAGATGCATATATACTGACCACACCCCTACGCAGTAATATCC
TAATAAAGATTGTTATTGTTGTAACAATTTGCTCTCCAGCTATGACTTCC
GAGTGCCTGCCACTGTTACTTTTTTTTTTTTTTTTGGGGGAAAGAAGGTT
TCCTTTAGGGGGGGAAAAAAC
Genomic location of TG583  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D442 marker 442
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