SGN Marker CT125
SGN-M452
| Synonyms |
| Locus associations |
| RFLP details |
|
Insert size
1600
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image |
|
Forward sequence
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTCGGCTTAAACGACGTTTTTAAATATCGTAAAACAAGTACAACATGGGGGAAGTTAC
CAATGTGATGGAGTTTGAAGCAATTGCAAAGCAAAAGTTGCCAAAAATGGGGTATGACTACTATGCATCTGGAACAAAGGATCAATGGAC TTTGGCTGAAAACAAAAATGCCTTTTCAAAAATTTTGTTTAGGCCTCGTATTCTTATTGATGTAAGCAAGATTGACTTAAGCACAAGCGT GCTCGGGTTCAATATCTCAATGCCTATCATGATTGCCCCAACAGCTATGCAGAAAATGGGTCATCCTGATGGTGAGTATGCTATAGCAAA AACACCATCGGCAGCAGGAACAATTATGACACTGTCCTCTTGGGGAACTTCAAGTGTCGAGGAGGTTAATTCAACAGGACCTGGCACCCG TTTTT |
|
Reverse sequence
not available
|
| RFLP sequence matches to unigenes |
| Unigene | e value | Match length (bp) | Strand |
|---|---|---|---|
| SGN-U155242 | 8.1e-06 | 53 (11.6% of RFLP seq) | + |
| SGN-U143618 | 3.9e-57 | 331 (72.7% of RFLP seq) | + |
| SGN-U160589 | 6.3e-59 | 182 (40.0% of RFLP seq) | + |
| SGN-U160592 | 5e-152 | 378 (83.1% of RFLP seq) | + |
| SGN-U143497 | 408 (89.7% of RFLP seq) | + |
 Mapped locations
|
Mapped locations
|  Tomato-EXPEN 1992 |
| Overgo hybridization and physical mapping |
CT125 was used as an overgo probe on plate 5 [well H2]
Plausible BAC Matches: None
Overgo Sequences
|
A sequence
GTGCTCGGGTTCAATATCTCAATG
|
|
B sequence
GGGCAATCATGATAGGCATTGAGA
|
|
AB sequence
GTGCTCGGGTTCAATATCTCAATGCCTATC
|
|
Marker sequence
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTCGGCTTAAACGACGTT
TTTAAATATCGTAAAACAAGTACAACATGGGGGAAGTTACCAATGTGATG GAGTTTGAAGCAATTGCAAAGCAAAAGTTGCCAAAAATGGGGTATGACTA CTATGCATCTGGAACAAAGGATCAATGGACTTTGGCTGAAAACAAAAATG CCTTTTCAAAAATTTTGTTTAGGCCTCGTATTCTTATTGATGTAAGCAAG ATTGACTTAAGCACAAGCGTGCTCGGGTTCAATATCTCAATGCCTATCAT GATTGCCCCAACAGCTATGCAGAAAATGGGTCATCCTGATGGTGAGTATG CTATAGCAAAAACACCATCGGCAGCAGGAACAATTATGACACTGTCCTCT TGGGGAACTTCAAGTGTCGAGGAGGTTAATTCAACAGGACCTGGCACCCG TTTTT |
| Genomic location of CT125
|
| User comments |
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