SGN Marker C2_At3g16150
SGN-M4656
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species
Synonyms |
Locus associations |
Orthologs in this COSII group |
Species | Copies | Sequence ID | CDS/Edited sequence | Peptide sequence | Predicted introns |
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Coffee | Single | 301023 (SGN) 124533 (CGN) | - | - | - |
Capsicum annuum | Single | SGN-U196433 | - | - | - |
Lycopersicon Combined | Single | SGN-U218429 | - | - | - |
Solanum tuberosum | Multiple | SGN-U245845 | - | - | - |
Arabidopsis | Single | At3g16150 on TAIR | - | - | - |
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| ![]() Pepper-COSII |
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| ![]() Tomato-EXPEN 2000 |
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| ![]() Arabidopsis COSII |
Other PCR data |
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Overgo hybridization and physical mapping |
C2_At3g16150 was used as an overgo probe on plate 13 [well C8]
Plausible BAC Matches: P214B18, P171B21, P308D07, P122I24, P018K15, P206I03, P145G05, P068A12, P214C02, P316E10, P297M18, P147G09, P165C11
Overgo Sequences
A sequence
ACATTGGAATCTCCGCTCTTCGCT
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B sequence
ATGGCAGGTAGAGAAGAGCGAAGA
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AB sequence
ACATTGGAATCTCCGCTCTTCGCTCTTCTC
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Marker sequence
ATGGGCGGTTGGGCTATAGCGGTGCACGGTGGCGCTGGTGTGGACCCAAA
TCTCCCAGATGAACGTCAACAACAAGCTAAGCAACTCCTTACTCGTTGCC TTAACATTGGAATCTCCGCTCTTCGCTCTTCTCTACCTGCCATTGATGTC GTTGAACTCGTTNNNNNGTGAGAGAACTTGAAAGTGATCCTCTATTCAAT TCGGGTCGTGGATCTGCATTAACTGCAAATAGAACAGTGGAAATGGAGGC GAGCATTATGGACGGCGATGGTAGACGATGCGGCGCCGTTTCTGGTATCT CCACCGTGAAAAACCCAATTTCTCTCGCTCGCCTTGTCATGGATAAATCC CCTCATTCTTACCTCGGTTTCTCCGGCGCCGAAGAATTCGCCAAACAACA GNNNNNGGCGTGGAAATGGTAGACAATGAATATTTCATAACTGAGGACAA TGTTGGTATGCTGAAGCTAGCCAAAGAGGCTAACACCATTTTGNNNNNTT CGATTACAGAATTCCATTAACTGGATTGGATTCGTGTGCGGCATCCGTTG AAAGCCCAATTCACATGAACGGATTACCGATAAATATTTATGCACCGGAG ACGGTCGGATGTGTGGTGGTAGACCGGCAAGGCAGGTGCGCCGCCGGTAC TTCCACCGGTGGTTTAATGAACAAAATGACCGGTCGGATCGGTGATTCAC CTCTGATTGGTGCTGGGACCTACGCCGGTGAGCTTTGTGGGGTGTCATGT ACAGGTGAAGGAGAAGCTATCATACGTGGTACCCTAGCACGTGACGTGGC AGCAGTTATGGAATACAAGGAATTGGGTCTTCAAGACGCAGTAAACTTTG TGATTAAGAAGAGATTGGATAAAGGTTTCGCTGGGCTTATTGCTGTGTCT AACAAGGGNGAAGTGGCTTTTGGGTTTAATTGTAATGGAATGTTTAGAGG ATGTGCTACTGAAGATGGATTTATGGATGTTGGTATTTGGTAA |
Universal primers for Asterid species |
No additional PCR data found.
Other COSII sequence data |
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree | [View]
Forward amplicon sequence for S. quitoense plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #1, plain text
Forward amplicon sequence for S. betaceum 04T130, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 04T130, plain text
Forward amplicon sequence for S. betaceum 04T132, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 04T132, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Forward amplicon sequence for S. betaceum 6002061 plant #4, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 6002061 plant #4, plain text
Forward amplicon sequence for S. uniloba 6002078 plant #6, AB1 chromatogram - [View]
Forward amplicon sequence for S. uniloba 6002078 plant #6, plain text
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree | [View]
Forward amplicon sequence for S. quitoense plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #1, plain text
Forward amplicon sequence for S. betaceum 04T130, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 04T130, plain text
Forward amplicon sequence for S. betaceum 04T132, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 04T132, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
Forward amplicon sequence for S. betaceum 6002061 plant #4, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 6002061 plant #4, plain text
Forward amplicon sequence for S. uniloba 6002078 plant #6, AB1 chromatogram - [View]
Forward amplicon sequence for S. uniloba 6002078 plant #6, plain text
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