SGN Marker CT225
SGN-M548
Synonyms |
Locus associations |
RFLP details |
Insert size
900
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image |
Forward sequence
CTTTTTCTGCATATATCACCATAAATTTAACAATCATCAATTCAAAAGAAGTACTAATATTACACAAGAAGAACCATTTCTATAGCTACT
TTTATTCCTCTTTCTCCTATTATAGTAACCCCATAACCATTCCACTCTCAATGATATACTTGTCCAAAAGAAAGTTGAGTACTATAATAT ATATGGAGCTCAAACATGTAAAGCTCATGACAAGGTTCAAAAGTGACGCGGCCCTTCAAGATAGAGGCTTCAGCCATCGTTAGAATTCAC TGACTATTTGACACACAAGTTGAAGCATCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTATGT CAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAAAAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGG ACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAG |
Reverse sequence
ACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCAAGGAATTGAAGTTCTGAGCAGTAAGAAGCCATTGCA
ATTTCAGCTCCCTTGAGTCCATAATCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGCAACCCATTGTTGTAATAGTCGTTGACA AGTTCCGAAAATTGGGCAAACATCAATTTCCCAATAGATGCAAGGGCCAATCTTGTATTATCCATGGACACACCAATAGGGGTACCTTGG AAGTTTCCACCGTGTAAGGCCTTGTTTCTTGAAACATCGATCAATGGGTTGTCGTTCACTGAGTTAATCTCTCTCTCAATCATCTTAGTT GCTGCACGGATGACTTCAATTTGAGGTCCAAGCCACTGTGGAGATGTTCGAAGAGCATAACGATCTTGCTTCGGTTTTTGA |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U160594 | 9.6e-12 | 35 (7.0% of RFLP seq) | + |
SGN-U147597 | 6.9e-59 | 230 (46.1% of RFLP seq) | + |
SGN-U143501 | 3e-132 | 237 (47.5% of RFLP seq) | + |
SGN-U143502 | 1e-63 | 154 (34.9% of RFLP seq) | - |
SGN-U147597 | 3e-116 | 434 (98.4% of RFLP seq) | - |
SGN-U143501 | 441 (100.0% of RFLP seq) | - |
![]() |
| ![]() Potato meta-QTL consensus map |
| ![]() Pepper-AC99 |
| ![]() Pepper-AC99 |
| ![]() Pepper-AC99 |
| ![]() Tomato-EXPEN 1992 |
| ![]() Tomato-EXPEN 1992 |
| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
CT225 was used as an overgo probe on plate 4 [well C3]
Plausible BAC Matches: None
Overgo Sequences
A sequence
TTGAAGCATCACCCTGGCCAGATT
|
B sequence
TAATAGCAGCAGCCTCAATCTGGC
|
AB sequence
TTGAAGCATCACCCTGGCCAGATTGAGGCT
|
Marker sequence
CTTTTTCTGCATATATCACCATAAATTTAACAATCATCAATTCAAAAGAA
GTACTAATATTACACAAGAAGAACCATTTCTATAGCTACTTTTATTCCTC TTTCTCCTATTATAGTAACCCCATAACCATTCCACTCTCAATGATATACT TGTCCAAAAGAAAGTTGAGTACTATAATATATATGGAGCTCAAACATGTA AAGCTCATGACAAGGTTCAAAAGTGACGCGGCCCTTCAAGATAGAGGCTT CAGCCATCGTTAGAATTCACTGACTATTTGACACACAAGTTGAAGCATCA CCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAA GCTCTTATGTCAAGGCAGCTCAGAAGCTCCATGAAATGGATCCTCTTCAA AAACCAAAGCAAGATCGTTATGCTCTTCGAACATCTCCACAGTGGCTTGG ACCTCAAATTGAAGTCATCCGTGCAGCAACTAAGATGATTGAGAGAGAG |
Marker Submitted By |
Name: Molly Jahn
Organization: Cornell University
Organization: Cornell University
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User comments |
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