SGN Marker CT227
SGN-M553
| Synonyms |
| Locus associations |
| RFLP details |
|
Insert size
300
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image
CT227 image not available
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|
Forward sequence
CTTTTTTTTTTTTTTTACACAAAACAAACACACTTTTATAAATAGACGCAACAGGAACAGAAACCAACAACATGACACAATTCAAAGTGC
AGAAACATAAAAGGCTTCTGGTGGAACACCAAAAGGCAAGACTAGTTGAGAAATTGCACACAGACGTTGCAAATCCCAACAGACACAAGT TTGGACGTATAAGTCCATTATTCTGAGAAAACAACAGACACTTTAAAAAAAAAAAAA |
|
Reverse sequence
TTTTTTTTTTTTTAAAGTGTCTGTTGTTTTCTCAAAATAATGGACTTATACGTCCAAACTTGTGTCTGTTGGGATTTGCAACGTCTGTGT
GCAATTTCTCAACTAGTCTTGCCTTTTGGTGTTCCACCAAAAGCCTTTTATGTTTCTGCACTTTGAATTGTGTCATGTTGTTGGTTTCTG TTCCTGTTGCGTCTATTTATAAAAGTGTGTTTGTTTTGTGTAAAAAAAAAAAAAAA |
| RFLP sequence matches to unigenes |
| Unigene | e value | Match length (bp) | Strand |
|---|---|---|---|
| SGN-U169929 | 8e-23 | 197 (83.1% of RFLP seq) | + |
| SGN-U160311 | 3.8e-74 | 187 (78.9% of RFLP seq) | + |
| SGN-U143137 | 4e-114 | 206 (86.9% of RFLP seq) | + |
| SGN-U169929 | 4.7e-18 | 197 (83.5% of RFLP seq) | - |
| SGN-U160311 | 3.8e-74 | 187 (79.2% of RFLP seq) | - |
| SGN-U143137 | 2e-109 | 206 (87.3% of RFLP seq) | - |
 Mapped locations
|
Mapped locations
|  Tomato-EXPEN 2000 |
| Overgo hybridization and physical mapping |
CT227 was used as an overgo probe on plate 11 [well F12]
Plausible BAC Matches: P161M16, P157F14
Overgo Sequences
|
A sequence
CACACAGACGTTGCAAATCCCAAC
|
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B sequence
GTCCAAACTTGTGTCTGTTGGGAT
|
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AB sequence
CACACAGACGTTGCAAATCCCAACAGACAC
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Marker sequence
CTTTTTTTTTTTTTTTACACAAAACAAACACACTTTTATAAATAGACGCA
ACAGGAACAGAAACCAACAACATGACACAATTCAAAGTGCAGAAACATAA AAGGCTTCTGGTGGAACACCAAAAGGCAAGACTAGTTGAGAAATTGCACA CAGACGTTGCAAATCCCAACAGACACAAGTTTGGACGTATAAGTCCATTA TTCTGAGAAAACAACAGACACTTTAAAAAAAAAAAAA |
| Related Markers
|
Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of CT227
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| User comments |
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