SGN Marker TG400
SGN-M565
Synonyms |
Locus associations |
RFLP details |
Insert size
1200
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
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Image |
Forward sequence
TTTTTTCAATAGAGGATGCTATACAGGCTAACAGTTATCATCCTAATGCGGAAAGGCGTCTGAATATGGGTGATGTTGAACAGTGTTTTC
AATCAGGTCAATGTGACCATATTATAGAAGGAGAAGTTAGGGTAGGTGGTCAGGAACATTTTTATTTGGAGCCTCAGGGCACTTTAATAT GGACAGTGGATAGTGGGAATGAGGTGCACATGCTCTCATCTACCCAGGTACTTCAACAGAAATCTAGTCATTTTCTCATGTTTTGTCAAG TATATTTTGGTTTATAAGACATCAATTGAGGTGTTGGGTTCTTTGTTTGTCTTTTTTCCCAATAAAACCTGTTGCTTGCTTGGATATATG TAATTTTTGATTATCCCTTTAAAAAGATGGTAATAAGTGTAATGGCTATCCATTGGCCATTGAATTGACAGCCGTTTCTTCTCCATAAAG CTTCAATCCTGATATGGAAGTCATTTTAGTTAATAAATTGCTCATAT |
Reverse sequence
CTCACTATAGGGAGACAGCTTGCATGCCTGCAGCAGCAAGGAAAGCAGATCTACTCTCCTTGCCTCCAAATCCACCACCTATCCTTTTAG
TCTTGCAAACCACTTTTGACATCGGAAGACCAAGAACGTGAGAAACATACTCCTGGTGCTTCTGAGGAGCCTGCAAAATAGACAATGATC CTCTTACAAAATTTTCAGCAGAGATATTAAATTACAGGGATGTAGCATTTTAAGCTGGTTTCACCCTAATTCATATGTCGAACCAAACCA GGCTTACAGCATAATAATGATCTGTAAAATTCTAAACAACCTTGCGGAACTAGCTAATTGAAGTCAAAGAGCACACTCATGACTAATTCT AATCTGACAATGCCAAACTTAGATAATTATAATTGATCAGACATATATATATCATGTGAGTGTGAGAAATCCAGAGCAAAATCATGAACT TTAGCAGGGAGCAATGCTATCTATAGTTAAAGATAGGTTTTGCATGATTTTTTACTGTGTAAAAAAGTAAAGAGTAGCAGTACAGAATAA GCATTTTAAAATGCATAT |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U144548 | 1.1e-60 | 161 (32.4% of RFLP seq) | + |
SGN-U144548 | 6.7e-47 | 134 (24.0% of RFLP seq) | - |
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| ![]() Tomato-EXPIMP 2009 |
| ![]() Potato meta-QTL consensus map |
| ![]() Eggplant-COSII |
| ![]() Tomato-EXPEN 2000 |
| ![]() Tomato-EXHIR 1997 |
| ![]() Eggplant-LXM 2002 |
| ![]() Tomato-EXPEN 1992 |
Other PCR data |
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Overgo hybridization and physical mapping |
TG400 was used as an overgo probe on plate 1 [well F6]
Plausible BAC Matches: P206H21, P172G16, P256E01, P277A04, P107N23
Overgo Sequences
A sequence
TGGACAGTGGATAGTGGGAATGAG
|
B sequence
ATGAGAGCATGTGCACCTCATTCC
|
AB sequence
TGGACAGTGGATAGTGGGAATGAGGTGCAC
|
Marker sequence
TTTTTTCAATAGAGGATGCTATACAGGCTAACAGTTATCATCCTAATGCG
GAAAGGCGTCTGAATATGGGTGATGTTGAACAGTGTTTTCAATCAGGTCA ATGTGACCATATTATAGAAGGAGAAGTTAGGGTAGGTGGTCAGGAACATT TTTATTTGGAGCCTCAGGGCACTTTAATATGGACAGTGGATAGTGGGAAT GAGGTGCACATGCTCTCATCTACCCAGGTACTTCAACAGAAATCTAGTCA TTTTCTCATGTTTTGTCAAGTATATTTTGGTTTATAAGACATCAATTGAG GTGTTGGGTTCTTTGTTTGTCTTTTTTCCCAATAAAACCTGTTGCTTGCT TGGATATATGTAATTTTTGATTATCCCTTTAAAAAGATGGTAATAAGTGT AATGGCTATCCATTGGCCATTGAATTGACAGCCGTTTCTTCTCCATAAAG CTTCAATCCTGATATGGAAGTCATTTTAGTTAATAAATTGCTCATAT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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