SGN Marker CT166
SGN-M579
Synonyms |
Locus associations |
RFLP details |
Insert size
900
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image |
Forward sequence
CAGGGGATTGTCTTAGTATCATTTCTCCTTATTTTTCCTTCTTCACCATTCCCCCCCTCTTAATTCTCTTTACTCATAATTCATAAAAAA
ACATGGCTACTGCAGTAAGTGCTGCAGTTTCTCTTCCTTCATCCAAGTCCACCTCCTTTTCCTCTAGAAACTCCATCATCTCTACAGACA AAATCAACTTCAACAAGGTGCCCTTGTACTACAGAAATGTGTCTGGTGCTAGTAGATTAGTTTCTATCAGAGCCCAAGTGACCACTGAGG CTCCTGCTAAAGTTGAGAAGATTTCAAAGAAACAGGAGGAAGGTGTGATTGTCAATAAATTCAGGCCAAAGGAACCTTATGTTGGTAGAT GTCTGCTAAACACTAAGATCACTGGTGATGATGCACCTGGAGAAACTTGGCATATGGTTTTCAGCACTGAGGGAGAGGTCCCATATATAG AAGGACAATCCATTGGGGTAATTGCTGATGGTGTTGATGCCAATGGGA |
Reverse sequence
CCTTGTAAAGTAGTGAGCTGCTGGTGGGAACACCCAAGAAAAGCCATGCTGTACCGTTGAACTTGTAATCCTCGTGTTTCTCAAAGAACA
TTTTCCACAGGAATGAACGGAAAGGAGCAATTCCAGTTCCAGTGGCAAGCATTATAACGGTGGCATTTGGATCTTTAGGCATGAGCATTT CTTTGCCTACAGGTCCAGTAATCTTGACCTCTGCTCCAGGCTTCAAGTCACATAAGAAGTTTGAGCAAACTCCTTTAACTTCTTCCCCTT TGTCATTGGTGTACACAAGCCTCTTGACACACAGGGAAACAGTTTTGGAGTCACCGAAGTCACCAAGGGCACTGCTAGCAATTGAGTACA ATCTAAGCTTGTGAGGCTTCCCATTGGCATCAACACCATCAGCAATTACCCCAATGGATTGTCCTTCTCTATATGGGACCTCTCCCTCAG TGCTGAAAACCATATGCCAAGTTTCACCAGGTGCATCATCACCAGTGATCTTAGTGTTTAGCAGACATCTAC |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U155031 | 7.4e-28 | 122 (24.5% of RFLP seq) | + |
SGN-U143166 | 479 (96.2% of RFLP seq) | + | |
SGN-U155031 | 4e-11 | 50 (9.6% of RFLP seq) | - |
SGN-U160330 | 2.8e-21 | 51 (9.8% of RFLP seq) | - |
SGN-U160330 | 3e-24 | 64 (12.3% of RFLP seq) | - |
SGN-U160331 | 3.7e-42 | 146 (28.0% of RFLP seq) | - |
SGN-U143166 | 522 (100.0% of RFLP seq) | - |
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| ![]() Pepper-AC99 |
| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
CT166 was used as an overgo probe on plate 6 [well H7]
Plausible BAC Matches: None
Overgo Sequences
A sequence
GCACCTGGAGAAACTTGGCATATG
|
B sequence
CCTCAGTGCTGAAAACCATATGCC
|
AB sequence
GCACCTGGAGAAACTTGGCATATGGTTTTC
|
Marker sequence
CAGGGGATTGTCTTAGTATCATTTCTCCTTATTTTTCCTTCTTCACCATT
CCCCCCCTCTTAATTCTCTTTACTCATAATTCATAAAAAAACATGGCTAC TGCAGTAAGTGCTGCAGTTTCTCTTCCTTCATCCAAGTCCACCTCCTTTT CCTCTAGAAACTCCATCATCTCTACAGACAAAATCAACTTCAACAAGGTG CCCTTGTACTACAGAAATGTGTCTGGTGCTAGTAGATTAGTTTCTATCAG AGCCCAAGTGACCACTGAGGCTCCTGCTAAAGTTGAGAAGATTTCAAAGA AACAGGAGGAAGGTGTGATTGTCAATAAATTCAGGCCAAAGGAACCTTAT GTTGGTAGATGTCTGCTAAACACTAAGATCACTGGTGATGATGCACCTGG AGAAACTTGGCATATGGTTTTCAGCACTGAGGGAGAGGTCCCATATATAG AAGGACAATCCATTGGGGTAATTGCTGATGGTGTTGATGCCAATGGGA |
Marker Submitted By |
Name: Molly Jahn
Organization: Cornell University
Organization: Cornell University
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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