SGN Marker CT52

SGN-M59

SynonymsNone
Locus associationsNone
RFLP details 
Insert size
700
Vector
pBLUESC
Cutting Site
EcoR1
Drug Resistance
AMP
Image
CT52 image not available
Forward sequence
TTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGATGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGC
CATGGTTCTATAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCATCTCCTAGTTTCAGTTATGATGAAGACCGC
ACACGGCCAGGAAAAGCTGTTGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGCGGAAGAAGGCAGCTGAGAGG
CGTGCACAGCTCGTGGAACTGGATGATGAATAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCATTTGAATAACT
ATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCTTTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTT
TTCTTTTTTCATG
Reverse sequence
CTTTTTTTTTTTTTTTTTTTTCTTGAAAGCATATTTCCCTTGGGTCTGCAGGACTTATACATTACATTACTTCTTGAAACAAATAAAGAG
AGTAAGCCCGATGGAGTTAACAATGAGAGGGTTAAAAAAAAATTTACTGTACAGGCTTCTGTACATGAAAAAAAAAAAACAATCGAATTG
ACTAATCCCTCGGAAAATATACCGTCTAAAGTCAAAAGCTAATTACTCGGGCCTGCATGACCACGGCCTTGGGAATAGTTATTCAAATGG
CCGATGGTTAAGTCTAAATGCCCTAATGTTTCCACCCCAAATTTTATTCATCATCCAGTTCCACGAGCTGGGCACGCCTCTCAGTTGCCT
TCTTCCGCACAAAAAACCCCCACCTCATTGCAGCCTTAATTTTCAGCCAACCAACAACAGTTTTTCCTGGCCGGGGGCG
RFLP sequence matches to unigenes 
Unigenee valueMatch length (bp)Strand
SGN-U1622654.6e-3273 (15.8% of RFLP seq)+
SGN-U148111447 (96.5% of RFLP seq)+
SGN-U1622652.6e-2773 (16.6% of RFLP seq)-
SGN-U1481119e-166412 (93.8% of RFLP seq)-
Mapped locations  
Map: Tomato - Kazusa and SolCAP markers mapped to genome   
Map version
105 (location: 49343)
Chromosome
7
Position
1.70 MB
Confidence
uncalculated
Protocol
unknown


Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map   
Map version
103 (location: 47280)
Chromosome
7
Position
3.74 cM
Confidence
uncalculated
Protocol
unknown


Kazusa F2-2000 genetic map

Map: Sun1642 x LA1589   
Map version
85 (location: 43654)
Chromosome
7
Position
9.60 cM
Confidence
uncalculated
Protocol
RFLP


Sun1642 x LA1589

Map: Yellow Stuffer x LA1589   
Map version
83 (location: 43513)
Chromosome
7
Position
10.30 cM
Confidence
uncalculated
Protocol
RFLP


Yellow Stuffer x LA1589

Map: Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589   
Map version
79 (location: 43054)
Chromosome
7
Position
9.90 cM
Confidence
uncalculated
Protocol
RFLP


Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589

Map: Eggplant-COSII   
Map version
63 (location: 42353)
Chromosome
7
Position
0.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Eggplant-COSII

Map: Tomato-EXPIMP 2008   
Map version
55 (location: 40731)
Chromosome
7
Position
9.00 cM
Confidence
uncalculated
Protocol
RFLP


Tomato-EXPIMP 2008

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39055)
Chromosome
7
Position
2.00 cM
Confidence
CF(LOD3)
Protocol
RFLP


Tomato-EXPEN 2000

Map: Tomato-EXHIR 1997   
Map version
32 (location: 7899)
Chromosome
7
Position
0.00 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXHIR 1997

Map: Eggplant-LXM 2002   
Map version
29 (location: 7901)
Chromosome
7
Position
0.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Eggplant-LXM 2002

Map: Tomato-EXPEN 1992   
Map version
28 (location: 7900)
Chromosome
7
Position
3.00 cM
Confidence
I(LOD2)
Protocol
RFLP


Tomato-EXPEN 1992

Map: Tomato-EXPIMP 2001   
Map version
26 (location: 7905)
Chromosome
7
Position
47.00 cM
Confidence
F(LOD3)
Protocol
RFLP


Tomato-EXPIMP 2001
Overgo hybridization and physical mapping 
CT52 was used as an overgo probe on plate 1 [well E3]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
ACTATTCACAAGGCCGTGGTCATG
B sequence
TAATTACTCGGGCCTGCATGACCA
AB sequence
ACTATTCACAAGGCCGTGGTCATGCAGGCC
Marker sequence
TTGTCTGAGGAGGAAATTCGAATGAGAAGCAATGAAATTCTTGAGAATGA
TGATATGCAACATTTGCTAAGACTTTTCAGCATGGGAGGCCATGGTTCTA
TAAATGTGCCTGAAGATGGATATGGTTTCCCATCTTTCATGCCTTCGCCA
TCTCCTAGTTTCAGTTATGATGAAGACCGCACACGGCCAGGAAAAGCTGT
TGTTGGTTGGCTGAAAATTAAGGCTGCAATGAGGTGGGGGTTCTTTGTGC
GGAAGAAGGCAGCTGAGAGGCGTGCACAGCTCGTGGAACTGGATGATGAA
TAAAATCTGGTGTGGAAACATTAGGGCATTTAGACTTAACCATCGACCAT
TTGAATAACTATTCACAAGGCCGTGGTCATGCAGGCCCGAGTAATTAGCT
TTCGACTCTAGACGGTATATTTTCCGAGGGATTAGTCAATTCGATTGTTT
TTCTTTTTTCATG
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of CT52  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D59 marker 59
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