SGN Marker TG269
SGN-M590
Synonyms |
Locus associations |
RFLP details |
Insert size
1090
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image |
Forward sequence
GGGAGACAGCTTGCATGCCTGCAGGGTATTGTTACACCACCCATTGGATGATCGAAGCCAAATTCTTCCTCAGCTTGACTAAGCAAGTCT
TGAAATAAAGGTTGGCTCAAGAATGAAATGGGAATTACAAATCTCTTCTTTTGTTTCTCCCCAACATAAACAGCAAAGTGGCCTTTAGGA ACATCTGCGACTGTAGAGGACTTCTTGATTATACGAGGCATACGGATAGCCATGGTCTTTTAGTTCAATATATAGATGAGGAAATAAGGA AGGGAAGAATTTGTAAGGACTCTGAAAGAACAGATAAGCTTTGTATGACTTAAATTTTTGGTCAGAGCTGTTATGGTAAACCCTTCTTTA TATGTGTTTATATAGGCCAATGACAAGTTGTCAAACCCCACTGATGTCTGAATATACATTTTGTGGACACCAGCTAAAGACAGTAGCACC TGAAGTATCACATGGTTTTGCCTTCCAACTCATTGTCAGAGTATTAATACATTGAAAGTAATCAATCTAAAAGCATAAGGT |
Reverse sequence
TGAGGATATGTTCATTGATCTCACATCTTGCTTGCGGAAATGAGAAAGAAACCAGTTCCCAATTTTGCTTGCACAATTTTGTGTAGTTGT
AAAACAGGATCTCCACTACGTACAGTTCAGAGTTAGAAGAAACTCTAGGTAGACTGAGGATACATTTTTCTACTTCAAAAGAAATTGAAG TAATAAAGCTTTTTACTTCTATGGTTCAACCATTCTATTCCATATATTGAATGTAATAAATTCATTGCAATATAATTTTTTTTCTCAACT CTCATGACTTGCTAATCTGAATTGAGATATTTAGATTTTCTAAACTATATGAATAAATCATGGTTTACTGTTACCGAGAGGTTTATGGTT CGGTCTCAACCTTGAGTATATTTTTGTTACACAATCAGTTTCTTTCTCAAAAGTATCCTTAAAGTTATACTCACTGATCCCTTTGCTTTA GCATTATGGATGATCAAGTTTTATAAAAAAATCTTCAGAT |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U146647 | 9.5e-06 | 29 (5.5% of RFLP seq) | + |
SGN-U172859 | 3.9e-08 | 57 (10.7% of RFLP seq) | + |
SGN-U166967 | 3e-24 | 152 (28.6% of RFLP seq) | + |
SGN-U146645 | 1.4e-38 | 168 (31.6% of RFLP seq) | + |
SGN-U146644 | 9.9e-46 | 168 (31.6% of RFLP seq) | + |
SGN-U146648 | 1e-48 | 149 (28.1% of RFLP seq) | + |
SGN-U146646 | 8.5e-71 | 234 (44.1% of RFLP seq) | + |
SGN-U146647 | 8.5e-71 | 218 (41.1% of RFLP seq) | + |
SGN-U146644 | 7e-25 | 89 (18.2% of RFLP seq) | - |
SGN-U146645 | 7e-25 | 205 (41.8% of RFLP seq) | - |
SGN-U146648 | 5e-35 | 202 (41.2% of RFLP seq) | - |
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| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
TG269 was used as an overgo probe on plate 3 [well D7]
Plausible BAC Matches: None
Non-Plausible BAC matches
Overgo Sequences
A sequence
ATGCCTGCAGGGTATTGTTACACC
|
B sequence
CGATCATCCAATGGGTGGTGTAAC
|
AB sequence
ATGCCTGCAGGGTATTGTTACACCACCCAT
|
Marker sequence
GGGAGACAGCTTGCATGCCTGCAGGGTATTGTTACACCACCCATTGGATG
ATCGAAGCCAAATTCTTCCTCAGCTTGACTAAGCAAGTCTTGAAATAAAG GTTGGCTCAAGAATGAAATGGGAATTACAAATCTCTTCTTTTGTTTCTCC CCAACATAAACAGCAAAGTGGCCTTTAGGAACATCTGCGACTGTAGAGGA CTTCTTGATTATACGAGGCATACGGATAGCCATGGTCTTTTAGTTCAATA TATAGATGAGGAAATAAGGAAGGGAAGAATTTGTAAGGACTCTGAAAGAA CAGATAAGCTTTGTATGACTTAAATTTTTGGTCAGAGCTGTTATGGTAAA CCCTTCTTTATATGTGTTTATATAGGCCAATGACAAGTTGTCAAACCCCA CTGATGTCTGAATATACATTTTGTGGACACCAGCTAAAGACAGTAGCACC TGAAGTATCACATGGTTTTGCCTTCCAACTCATTGTCAGAGTATTAATAC ATTGAAAGTAATCAATCTAAAAGCATAAGGT |
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