SGN Marker CT170
SGN-M595
| Synonyms |
| Locus associations |
| RFLP details |
|
Insert size
300
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image
CT170 image not available
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|
Forward sequence
TTCATAAATAGTGATATAGATCATTTCATATATAGCTTAAAGTTTGTCCTAAATACATCTAATGGAACATTAGTATCATTTTAAGGGCTC
ACTCACGTAATTTTTTTCTCAAATGATCAAACTAATAGAACTCATAAAATTAGACAAGTGGAACCTTTTTACGAGTTAGGACATCATTGA TATGCTGGGCCTGGGAATATGCGCTCACGACTTGTTATCTTCTTTCAGCA |
|
Reverse sequence
CTAGAATCTCTGTCCAATATGTGCTGAAAGAAGATAACAAGTCGTGAGCGCATATTCCCAGGCCCAGCATATCAATGATGTACTAACTCG
TAAAAAGGTTCGACTTGTCTAATTTTATGAGTTCTATTAGTTTGATCATTTGAGAAAAAAATTACGTGAGTGAGCCCTTAAAATGATATT AATGTTCTATTAGATGTATTTTGGACAAACTTTAAGCTATATATGAAATGATCTATATCACTATTTATGAAAAAAAAAAAAAAAAAA |
| RFLP sequence matches to unigenes |
| Unigene | e value | Match length (bp) | Strand |
|---|---|---|---|
| SGN-U169022 | 7.7e-60 | 123 (53.5% of RFLP seq) | + |
| SGN-U169022 | 4.5e-77 | 144 (53.9% of RFLP seq) | - |
 Mapped locations
|
Mapped locations
|  Tomato-EXHIR 1997 |
|  Tomato-EXPEN 1992 |
| Overgo hybridization and physical mapping |
CT170 was used as an overgo probe on plate 4 [well D5]
Plausible BAC Matches: None
Non-Plausible BAC matches
Overgo Sequences
|
A sequence
CATTGATATGCTGGGCCTGGGAAT
|
|
B sequence
CAAGTCGTGAGCGCATATTCCCAG
|
|
AB sequence
CATTGATATGCTGGGCCTGGGAATATGCGC
|
|
Marker sequence
TTCATAAATAGTGATATAGATCATTTCATATATAGCTTAAAGTTTGTCCT
AAATACATCTAATGGAACATTAGTATCATTTTAAGGGCTCACTCACGTAA TTTTTTTCTCAAATGATCAAACTAATAGAACTCATAAAATTAGACAAGTG GAACCTTTTTACGAGTTAGGACATCATTGATATGCTGGGCCTGGGAATAT GCGCTCACGACTTGTTATCTTCTTTCAGCA |
| Related Markers
|
Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of CT170
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| User comments |
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