SGN Marker C2_At1g03150

SGN-M6485
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303643 (SGN)
121815 (CGN)
---
Capsicum annuumSingleSGN-U197894---
Lycopersicon CombinedSingleSGN-U216737---
Solanum tuberosumSingleSGN-U253209---
ArabidopsisSingleAt1g03150 on TAIR---
Mapped locations  
Map: Tobacco N. acuminata   
Map version
89 (location: 46420)
Chromosome
6
Position
80.80 cM
Confidence
F(LOD3)
Protocol
PCR


Tobacco N. acuminata

Map: Pepper-COSII   
Map version
58 (location: 41285)
Chromosome
6
Position
80.60 cM
Confidence
F(LOD3)
Protocol
dCAPS


Pepper-COSII

PCR data   Exp. ID 43261
Forward primer (5'-3')
TGCCAGTTTCCTGCCGGATTA
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AACAATCAACATTACAAATCATATTAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38053)
Chromosome
6
Position
41.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39357
Forward primer (5'-3')
TGTGAGAGCATCAAACACACCAGC
Accessions and product sizes
Solanum lycopersicum TA209
350
Solanum pennellii TA56
350
Approximate temperature
55°C
Reverse primer (5'-3')
ACCGGTCGTTTAAGAGGGATGATAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 24882)
Chromosome
1
Position
0.76 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 9897
Forward primer (5'-3')
TGTGAGAGCATCAAACACACCAGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCGGTCGTTTAAGAGGGATGATAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 9898
Forward primer (5'-3')
TGTGAGAGCATCAAACACACCAGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCGGTCGTTTAAGAGGGATGATAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 9899
Forward primer (5'-3')
TGTGAGAGCATCAAACACACCAGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACCGGTCGTTTAAGAGGGATGATAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 350
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Amplicon sequence alignment, FASTA
At1g03150F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At1g03150  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6485 marker 6485
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