Sol Genomics Network

SGN Marker C2_At1g04030

SGN-M6492
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	308138 (SGN) 125863 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U200273	-	-	-
Lycopersicon Combined	Single	SGN-U222951	-	-	-
Solanum tuberosum	Single	SGN-U253961	-	-	-
Arabidopsis	Single	At1g04030 on TAIR	-	-	-

Mapped locations

Map: Arabidopsis COSII
Map version 44 (location: 24889)
Chromosome 1
Position 1.04 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

PCR data Exp. ID 40985

Forward primer (5'-3')

ATAGGAGTGCTTACATCCATCCTGTG

Accessions and product sizes

Approximate temperature

Unknown

Reverse primer (5'-3')

TGTACTTGCTCGTCGAGTTTGGTATG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 9906
Forward primer (5'-3') ATACCAAACTCGACGAGCAAGTACAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGGTGTGGAGTGCCAATTAACTCTC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 150	Approximate temperature 55°C

PCR data Exp. ID 9907
Forward primer (5'-3') ATACCAAACTCGACGAGCAAGTACAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGGTGTGGAGTGCCAATTAACTCTC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 150	Approximate temperature 55°C

PCR data Exp. ID 9908
Forward primer (5'-3') ATACCAAACTCGACGAGCAAGTACAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGGTGTGGAGTGCCAATTAACTCTC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 150	Approximate temperature 55°C

PCR data Exp. ID 12146
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 530	Approximate temperature 55°C

PCR data Exp. ID 12147
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 530	Approximate temperature 55°C

PCR data Exp. ID 12148
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Solanum melongena TA2986: 550	Approximate temperature 55°C

PCR data Exp. ID 12149
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 550	Approximate temperature 55°C

PCR data Exp. ID 12150
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 530	Approximate temperature 55°C

PCR data Exp. ID 12151
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 530	Approximate temperature 55°C

PCR data Exp. ID 12152
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 530	Approximate temperature 55°C

PCR data Exp. ID 12153
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 530	Approximate temperature 55°C

PCR data Exp. ID 12154
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Physalis TA1367: 550	Approximate temperature 55°C

PCR data Exp. ID 12155
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 550	Approximate temperature 55°C

PCR data Exp. ID 12156
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 550	Approximate temperature 55°C

PCR data Exp. ID 12157
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Coffea canephora BP409: 580	Approximate temperature 55°C

PCR data Exp. ID 33301
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 530	Approximate temperature 55°C

PCR data Exp. ID 33302
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 530	Approximate temperature 55°C

PCR data Exp. ID 33303
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 530	Approximate temperature 55°C

PCR data Exp. ID 33304
Forward primer (5'-3') ATAGGAGTGCTTACATCCATCCTGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGTACTTGCTCGTCGAGTTTGGTATG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 530	Approximate temperature 55°C

Unigene blast matches for primers

SGN-U222951
SGN-U279497

Universal primers for Asterid species

No additional PCR data found.

Other COSII sequence data

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

BLASTX result of original unigene sequences against Arabidopsis protein database

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At1g04030

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6492 marker 6492

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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