SGN Marker C2_At1g05720

SGN-M6516
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple300693 (SGN)
120214 (CGN)
---
Capsicum annuumSingleSGN-U198051---
Lycopersicon CombinedSingleSGN-U224064---
Solanum tuberosumSingleSGN-U267418---
ArabidopsisSingleAt1g05720 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 24913)
Chromosome
1
Position
1.72 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 40995
Forward primer (5'-3')
AGCAGTTGAGCACGAAAGAGTGTG
Accessions and product sizes
Solanum lycopersicum TA209
850
Approximate temperature
45°C
Reverse primer (5'-3')
TGCAACAGCTCAAACATTCAGACAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 9932
Forward primer (5'-3')
AGCAGTTGAGCACGAAAGAGTGTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCAACAGCTCAAACATTCAGACAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 850
Approximate temperature
45°C
  
PCR data   Exp. ID 9933
Forward primer (5'-3')
AGCAGTTGAGCACGAAAGAGTGTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCAACAGCTCAAACATTCAGACAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 850
Approximate temperature
45°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At1g05720  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6516 marker 6516
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