SGN Marker C2_At1g07830

SGN-M6535
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U205490---
Lycopersicon CombinedSingleSGN-U221220---
Solanum tuberosumSingleSGN-U249514---
ArabidopsisSingleAt1g07830 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38072)
Chromosome
3
Position
101.30 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 41003
Forward primer (5'-3')
GTCGAGGTTGGAAGGCTTCTGAA
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
TTGATTCGGCACATCGACTTCCTTAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 24933)
Chromosome
1
Position
2.42 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 9947
Forward primer (5'-3')
ATGGTCGAGGTTGGAAGGCTTCTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTAGGAAAACGCAGGTTCTGAGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 150
Approximate temperature
55°C
  
PCR data   Exp. ID 9948
Forward primer (5'-3')
ATGGTCGAGGTTGGAAGGCTTCTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTAGGAAAACGCAGGTTCTGAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 150
Approximate temperature
55°C
  
PCR data   Exp. ID 9949
Forward primer (5'-3')
ATGGTCGAGGTTGGAAGGCTTCTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTAGGAAAACGCAGGTTCTGAGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 150
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g07830  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6535 marker 6535
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