SGN Marker C2_At1g08630

SGN-M6548
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U203440---
Lycopersicon CombinedSingleSGN-U219021---
Solanum tuberosumSingleSGN-U265066---
ArabidopsisSingleAt1g08630 on TAIR---
Mapped locations  
Map: Pepper-COSII   
Map version
58 (location: 41292)
Chromosome
5
Position
18.30 cM
Confidence
F(LOD3)
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43268
Forward primer (5'-3')
TATTCTCGGTGATTATTCCCATATCC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AGACCATACTTCTTTGCTAGCTCTCC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38074)
Chromosome
4
Position
22.70 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 41008
Forward primer (5'-3')
TATTCTCGGTGATTATTCCCATATCC
Accessions and product sizes
Solanum pennellii TA56
225
Solanum lycopersicum TA209
250
Approximate temperature
55°C
Reverse primer (5'-3')
AGACCATACTTCTTTGCTAGCTCTCC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 24946)
Chromosome
1
Position
2.75 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Genomic location of C2_At1g08630  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6548 marker 6548
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